| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,099,955 – 13,100,050 |
| Length | 95 |
| Max. P | 0.514036 |
| Location | 13,099,955 – 13,100,050 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 80.81 |
| Mean single sequence MFE | -27.23 |
| Consensus MFE | -17.59 |
| Energy contribution | -18.03 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13099955 95 - 27905053 CAGUUAUUUGCUUGGGUCCCCCAGCCUUUGUCAAUAGUUACCGAGAUCAAAGUGGACCCAAGACUAGCUGGUUU-UCCA-GUGGAUGAUGG-CGCAAA ..((((((..(((((((((......(((((((............)).))))).))))))))).(((.((((...-.)))-))))..)))))-)..... ( -27.80) >DroSec_CAF1 129676 92 - 1 CAGCUAUUUGCUUGGGUC--CCAGCCUUUGUCAAUAGUUGCCGAGAUCAAAGUGGACCCAAGACUAGCUUCCUU-U-CA-GUGGAUGGUGG-CGCAAA ..((......((((((((--(....(((((((............)).))))).)))))))))....(((.((.(-(-..-...)).)).))-)))... ( -27.30) >DroSim_CAF1 115181 92 - 1 CAGCUAUUUGCUUGGGUC--CCAGCCUUUGGCAAUAGUUGCCGAGAUCAAAGUGGACCCAAGACUAGCUUCCUU-U-CA-GUGGAUGGUGG-CGCAAA ..((......((((((((--((....(((((((.....)))))))......).)))))))))....(((.((.(-(-..-...)).)).))-)))... ( -31.10) >DroEre_CAF1 120066 85 - 1 CAGUUAUUUGCUUGGGUC--CCAGCCUUUGUCAAUAGUGGCCGAGAUCAAAGCGGACCCAAGACUAGCUGGCUUCUCCA-CUG----------CCAAA .(((((....((((((((--(..(((((.((((....)))).)))......)))))))))))..)))))(((.......-..)----------))... ( -27.30) >DroYak_CAF1 124707 77 - 1 CAGUUAUUUGCUUGGGUC--CCAGCCUUUGUCAAUACUUGCCGAGAUCAAAGUGGACCCAAGACUAGCUGGCUUAUCCG------------------- ((((((....((((((((--(....(((((((............)).))))).)))))))))..)))))).........------------------- ( -25.20) >DroAna_CAF1 121003 94 - 1 CAGAUGUUUGUUCGGGUC--CCGGCCUUUGUCAAUAGUUGCCAAGAUCAAAGUGGACCCAAGACUAGCUGGGAU-A-CAGGUGGAUGGGGAAUGCAAA ....(((..(((((((((--(....(((((((............)).))))).))))))....(((.(((....-.-))).))).....))))))).. ( -24.70) >consensus CAGUUAUUUGCUUGGGUC__CCAGCCUUUGUCAAUAGUUGCCGAGAUCAAAGUGGACCCAAGACUAGCUGGCUU_U_CA_GUGGAUGGUGG_CGCAAA ((((((....(((((((...(((..(((((((............)).)))))))))))))))..))))))............................ (-17.59 = -18.03 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:24 2006