Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,096,473 – 13,096,565 |
Length | 92 |
Max. P | 0.864885 |
Location | 13,096,473 – 13,096,565 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 78.06 |
Mean single sequence MFE | -27.14 |
Consensus MFE | -17.18 |
Energy contribution | -18.35 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.28 |
Mean z-score | -1.79 |
Structure conservation index | 0.63 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13096473 92 + 27905053 ---UUCAUCGUUGCUGAUUUGCCACGACGCC-UCU-GCACCAUGUGGC-UCGU-----UGAGUUGAGUUGGCAAAAUGGAAGCCAUUAAGCGAAUGGUUUCCC ---.......((((..(((((((((((.(((-.(.-.......).)))-))).-----)).).)))))..))))...((((((((((.....)))))))))). ( -31.50) >DroSec_CAF1 126269 92 + 1 ---UUAUACGUUGCAGAUUUGCCACGACGCC-UCU-GCACCAUGUGGC-UCGU-----UGAGUUGAGUUGGCAAAAUGGAAGCCAUUAAACGAAUGGUUUCCC ---.......((((.((((((((((((.(((-.(.-.......).)))-))).-----)).).)))))).))))...((((((((((.....)))))))))). ( -28.20) >DroSim_CAF1 111728 92 + 1 ---UUAUACGUUGCAGAUUUGCCACGACGCC-UCU-GCACCAUGUGGC-UCGU-----UGAGUUGAGUUGGCAAAAUGGAAGCCAUUAAACGAAUGGUUUCCC ---.......((((.((((((((((((.(((-.(.-.......).)))-))).-----)).).)))))).))))...((((((((((.....)))))))))). ( -28.20) >DroEre_CAF1 116740 83 + 1 ---UUUAA--------------CACGACGCC-CCU-GCAGCAUGUGGC-UUGUUAAGUUGAGUUGAGUUGGCAAAAUGGAAGCCAUUAAACGAAUGGUUUCCC ---(((((--------------(.((((...-...-(((((.....))-.)))...)))).))))))..........((((((((((.....)))))))))). ( -22.80) >DroYak_CAF1 121194 92 + 1 ---UUUACCAUUGCAGAUUUUCCACGACGCC-ACU-GCACCAUGUGGC-UUGU-----UGAGUUGAGCUGGGAAAAUGGAAGCCAUUAAACGAAUGGUUUCCC ---....((...((.(((((...((((.(((-((.-.......)))))-))))-----.)))))..))..)).....((((((((((.....)))))))))). ( -30.70) >DroAna_CAF1 117738 94 + 1 CCCAUCCCUAUUGC----UUACACCAGCGUCUUCUGGUUCUUUGUGGCAUUUU-----UGAAUUGCGUUGCCAAAAUGGAAGCCAUUAAACAAAUGGCAUCCC ..............----....(((((......)))))......(((((....-----..........)))))....(((.((((((.....)))))).))). ( -21.44) >consensus ___UUAAACGUUGCAGAUUUGCCACGACGCC_UCU_GCACCAUGUGGC_UCGU_____UGAGUUGAGUUGGCAAAAUGGAAGCCAUUAAACGAAUGGUUUCCC .................(((((((((((((......)).((....))..............))))...)))))))..((((((((((.....)))))))))). (-17.18 = -18.35 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:23 2006