Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,092,675 – 13,092,781 |
Length | 106 |
Max. P | 0.900458 |
Location | 13,092,675 – 13,092,781 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 87.74 |
Mean single sequence MFE | -32.32 |
Consensus MFE | -22.88 |
Energy contribution | -24.36 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.20 |
Mean z-score | -2.58 |
Structure conservation index | 0.71 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900458 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13092675 106 - 27905053 UUUUGCUCUGUUUGCUUUCGGAGCGUGUGACUUCGUUGGCCCGGCCUUUGUUUUUAUACCCAGCAUUGCAUUUGGGUACAGGGCCAUACCGAACUUAUC-----AUAUAUC ....((((((........))))))((((((.((((.(((((((((....)))....(((((((........)))))))..))))))...))))....))-----))))... ( -34.60) >DroSec_CAF1 122424 111 - 1 UUUUGCUCUGUUUGCUUUCGGAGCGUGUGACUUCGUUGGCCCGGCCUUUGUUUUUAUACUCAGUAUUGCAUUUGGGCACAGGGCUAUACCGAACUUAUCAUAUCAUAUAUC ....((((((........))))))((((((.((((.((((((.((((.(((....((((...)))).)))...))))...))))))...))))....))))))........ ( -34.40) >DroSim_CAF1 107783 111 - 1 UUUUGCUCUGUUUGCUUUCGGAGCGUGUGACUUCGUUGGCCCGGCCUUUGUUUUUAUACCCAGUAUUGCAUUUGGUUACUGGGCUAUACCGAACUUAUCAUAUCAUAUAUC ....((((((........))))))((((((.((((.((((((((((..(((....((((...)))).)))...))...))))))))...))))....))))))........ ( -30.80) >DroEre_CAF1 113282 110 - 1 UUUUGCUCUGUUUGCCUUCGGAGCGUGUGACUUCGUUGGCCCGGCCUUUGUUUUCACACCCAGUACUGCUGUUG-GCACGCGGCUAUGCCGAUUUCACCAUAUCAUAUAUC ....((((((........))))))(.((((..(((.((((((((((..(((....)))..(((.....)))..)-)).)).)))))...)))..)))))............ ( -33.10) >DroYak_CAF1 116572 110 - 1 UUUUGCUCUGUUUGCUUGCGGAGCGUGUGACUUCGUUGGCCCGGCCUUUGUUUUCAUACCCAGUAGUGUUUUUG-GCACGUGGCUAUACCGAUUCUACCAUAUCCUAUAUC ....(((((((......)))))))(((.((..(((.((((((((((........(((........))).....)-)).)).)))))...))).)))))............. ( -28.72) >consensus UUUUGCUCUGUUUGCUUUCGGAGCGUGUGACUUCGUUGGCCCGGCCUUUGUUUUUAUACCCAGUAUUGCAUUUGGGCACAGGGCUAUACCGAACUUAUCAUAUCAUAUAUC ....((((((........))))))..((((.((((.((((((.((((.(((...(((.....)))..)))...))))...))))))...)))).))))............. (-22.88 = -24.36 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:22 2006