Locus 4973

Sequence ID 3R_DroMel_CAF1
Location 13,092,524 – 13,092,636
Length 112
Max. P 0.785719
window8135

overview

Window 5

Location 13,092,524 – 13,092,636
Length 112
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 83.28
Mean single sequence MFE -26.53
Consensus MFE -17.70
Energy contribution -17.60
Covariance contribution -0.10
Combinations/Pair 1.15
Mean z-score -2.26
Structure conservation index 0.67
SVM decision value 0.57
SVM RNA-class probability 0.785719
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13092524 112 - 27905053
UGGGGUAAUCAUUUAGUUCUCAGGGAAACUUGGGAAAUGGUUUUUUUUUUUUCAUUAGCAUAUCAGUUUGUAAAAAAUGGAUUAACAU-----AAUCCAUUAAAUAGUUCCACCACG
(((((.(((.((((((((((((((....))))))))..........((((((.((.(((......))).))))))))(((((((...)-----)))))))))))).))))).))).. ( -26.10)
>DroSec_CAF1 122278 106 - 1
UGGGGUAAUCAUUUAGUUCUUGGGGAAACUUGGGAAACUGUUUUUU-----------GCAUAUCAGUUUGUGGAAAAUGGCUUAAUAUAUGGUAAUCCAUUAAAUAGUUCCACCACG
(((((.(((.((((((((((..((....))..)))).((((((((.-----------.((........))..)))))))).........(((....))))))))).))))).))).. ( -29.60)
>DroSim_CAF1 107642 101 - 1
UGGGGUAAUCAUUAAGUUCUUGGGGAAACGUGGGAAACUGUUUUUU-----------GCAUAUCAGUUUGUAAAAAAUGGCUUAAUAU-----AAUCCAUUAAAUAUUUCCACCACA
..((((.((.((((((((((((.(....).)))))).(((((((((-----------(((........))))))))))))))))))))-----.))))................... ( -23.90)
>consensus
UGGGGUAAUCAUUUAGUUCUUGGGGAAACUUGGGAAACUGUUUUUU___________GCAUAUCAGUUUGUAAAAAAUGGCUUAAUAU_____AAUCCAUUAAAUAGUUCCACCACG
(((((.((..((((((((((((((....)))))))..(((((((((...........(((........))))))))))))..................)))))))..)))).))).. (-17.70 = -17.60 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:21 2006