Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,085,928 – 13,086,025 |
Length | 97 |
Max. P | 0.581497 |
Location | 13,085,928 – 13,086,025 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 81.57 |
Mean single sequence MFE | -25.99 |
Consensus MFE | -16.64 |
Energy contribution | -17.95 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.22 |
Mean z-score | -1.66 |
Structure conservation index | 0.64 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581497 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13085928 97 - 27905053 CUAAUGCAGGAGCAUGGAAUUGACAGGCACCAUGCUCCGAC-AGACCAAGACAGUGGGCAAUAAAGUUCCAA-AGGCUAGCGCUACAGAACGAUGUGCA ....((..(((((((((............)))))))))..)-)..(((......)))(((.....((((...-.(((....)))...))))....))). ( -28.60) >DroPse_CAF1 108949 95 - 1 CUAAUACAGAGGCAUUCAAUUGACACGCUGCUUGCCCCAACUAGCCGAAGACAAUAGGCAAUAAAGCAGCAA-AAUCAACC---ACAGCAUGAUGUGCA ....((((...((......((((...((((((((......)..(((..........)))....)))))))..-..))))..---...))....)))).. ( -17.10) >DroSec_CAF1 105513 97 - 1 CUAAUGCAGGGGCAUGGAAUUGACAGGCACCAUGCUCCGAC-AGCCCAAGACAAUGGGCAAUAAAGUUCCGA-AGGCUAGCACUACAGAACGAUGUGCA ....(((.(((((((((............))))))))).((-((((((......)))))......((((.(.-((.......)).).))))..)))))) ( -31.90) >DroSim_CAF1 100583 97 - 1 CUAAUGCAGGGGCAUGGAAUUGACAGGCACCAUGCUCCGAC-AGCCCAAGACAAUGGGCAAUAAAGUUCCGA-AGGCUAGCACUACAGAACGAUGUGCA ....(((.(((((((((............))))))))).((-((((((......)))))......((((.(.-((.......)).).))))..)))))) ( -31.90) >DroYak_CAF1 109210 97 - 1 CUAAUGCAGGAGCAUGGAAUUGACAGGCACCGCGCUCCAAC-AGCACAAGACAAUGGGCAAUAAACUUGCAG-AGCCUAGCACUUCAGAACGAUGUGCA ((..(((.(((((.(((............))).)))))...-.)))..))....(((((.............-.)))))((((.((.....)).)))). ( -23.94) >DroAna_CAF1 107015 98 - 1 CUAAUGCAGGGGCAUGGAAUUGACAAGCAGCAUGCUCGAAC-AGCCCAAGACAAUAGGCAAUAAAGUGGUAACAGGCAACAAACAUAGCCUAAUGUGGA .........((((.((...((((...((.....)))))).)-)))))...(((.(((((......((....)).(....).......))))).)))... ( -22.50) >consensus CUAAUGCAGGGGCAUGGAAUUGACAGGCACCAUGCUCCAAC_AGCCCAAGACAAUGGGCAAUAAAGUUCCAA_AGGCUAGCACUACAGAACGAUGUGCA ....(((((((((((((............))))))))).....(((((......)))))....................................)))) (-16.64 = -17.95 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:18 2006