Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,078,402 – 13,078,500 |
Length | 98 |
Max. P | 0.809544 |
Location | 13,078,402 – 13,078,500 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 94.06 |
Mean single sequence MFE | -32.85 |
Consensus MFE | -27.83 |
Energy contribution | -28.57 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 0.85 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809544 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13078402 98 - 27905053 UUAAUAAAAGCGCAUUUAUGCGUUUCUGCGGCAAUUAAGUGCAGCAGAGUGCAGCCGACAUUCUGAUGC------UGCAUGCCCCCAAUCGGCGCUCGGAAAUC .........(((((....)))))(((((.(((......((((((((((((((....).)))))...)))------)))))(((.......)))))))))))... ( -31.70) >DroSec_CAF1 98196 98 - 1 UUAAUAAAAGCGCAUUUAUGCGUUUCUGCGGCAAUUAAGUGCUGCAGAGUGCAGCCGACGUUCUGAUGC------UGCAUGCCCCCAAUCGGCGCUCGGAAAUC ........((((((....))))))(((((((((......)))))))))(((((((............))------)))))(((.......)))........... ( -32.50) >DroSim_CAF1 92607 97 - 1 UUAAUAA-AGCGCAUUUAUGCGUUUCUGCGGCAAUUAAGUGCUGCAGAGUGCAGCCGACGUUCUGAUGC------UGCAUGCCCCCAAUCGGCGCUCGGAAAUC .......-((((((....))))))(((((((((......)))))))))(((((((............))------)))))(((.......)))........... ( -32.50) >DroEre_CAF1 98737 103 - 1 UUAAUAAAAGCGCAUUUAUGCGUUUCUGCGGCAAUUAAGUGCUGCAGAGUGCAGCCCACGUUCUGAUACUGAUGCUGCAUGCC-CCAAUCGGCGCUCGGAAAUC ........((((((....))))))(((((((((......)))))))))(((((((.((.((......))))..)))))))(((-......)))........... ( -34.70) >consensus UUAAUAAAAGCGCAUUUAUGCGUUUCUGCGGCAAUUAAGUGCUGCAGAGUGCAGCCGACGUUCUGAUGC______UGCAUGCCCCCAAUCGGCGCUCGGAAAUC ........((((((....))))))(((((((((......)))))))))(.((.(((((......(((((.......)))).)......))))))).)....... (-27.83 = -28.57 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:16 2006