Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,078,241 – 13,078,341 |
Length | 100 |
Max. P | 0.939726 |
Location | 13,078,241 – 13,078,341 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 72.97 |
Mean single sequence MFE | -17.45 |
Consensus MFE | -3.02 |
Energy contribution | -3.18 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.25 |
Mean z-score | -2.00 |
Structure conservation index | 0.17 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939726 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13078241 100 + 27905053 GAAUAAUUACAUUUUUUUCACAUUUUUUUUUAGUGAGCUUGCCUUUGGUAUUUUCCGCACAGAAAUUCUUGGUAAUCUCAUCAGAUUAAACUGUUAUUCA (((((..............(((.(((..(((.(((((.(((((...((...((((......))))..)).))))).))))).)))..))).)))))))). ( -17.83) >DroSec_CAF1 98039 94 + 1 GACAAAUUAC--UCUUUUCCCAUUU----UUAGUGAGCUUGCCAUUGGUAUUUUCCGCACAGAAAUUCUUGGUUAUCUCAUCAGAGUAAACUGUUAUUCC ((((..((((--(((..........----...(((((...((((..((...((((......)))).)).))))...))))).)))))))..))))..... ( -17.44) >DroSim_CAF1 92449 95 + 1 GACAAAUUAC--UCUUUUCCCAUUUU---UUUGUGAGCUUGCCAUUGGUAUUUUCCGCACAGAAAUUCUUGGUUAUCUCAUCAGAGUAAACUGUUAUUCC ((((..((((--(((.(..(((..((---((((((....((((...)))).......))))))))....)))..).......)))))))..))))..... ( -18.80) >DroEre_CAF1 98587 90 + 1 CACUUAUUAA--AUGCUGUCAA-UUUUUUGUAGUAAAC-------UAAUAUUUUCACUGCAGAACUUCUCCGCAGUCUCAUCUGAGUAAACUGUUAUUCA ....(((((.--.(((((.(((-....))))))))...-------))))).....(((((.((.....)).))))).......((((((....)))))). ( -14.60) >DroYak_CAF1 101475 96 + 1 CACUUAUUAA--AUUGUUUAAA--UUUUUGCAGUGAGCUUGCCAUUAGUAUUUUCACUGCAGCUCUCCUUCGUAAUCCCAUCUGAGUAAACUUUUAUUCA .......(((--(..((((...--....(((((((((..(((.....)))..)))))))))((((..................)))))))).)))).... ( -18.57) >consensus GACUAAUUAC__UUUUUUCCCAUUUUUUUUUAGUGAGCUUGCCAUUGGUAUUUUCCGCACAGAAAUUCUUGGUAAUCUCAUCAGAGUAAACUGUUAUUCA ................................(((....(((.....))).......))).......................((((((....)))))). ( -3.02 = -3.18 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:15 2006