Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,067,022 – 13,067,152 |
Length | 130 |
Max. P | 0.940614 |
Location | 13,067,022 – 13,067,120 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 69.36 |
Mean single sequence MFE | -15.38 |
Consensus MFE | -6.64 |
Energy contribution | -6.96 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.25 |
Mean z-score | -1.95 |
Structure conservation index | 0.43 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.898870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13067022 98 + 27905053 UCUAAUCCAUUUUGGCUUC-UUGGGGAAAUAU------------ACUUUAUCCAACUAACUGAUUUUAAAUUCUUAGAGAGAUUUUCUGAUCUCUCUCCAAAUAACUUCUG----- ..........(((((....-((((..(((...------------..)))..))))....................(((((((((....)))))))))))))).........----- ( -17.10) >DroSec_CAF1 86987 89 + 1 UCUAAUCCAUUCUG----------GAAAAUAU------------ACUUUAUCCAACUAACUGAUUUUAAAUUCUUAGAGAGAUUUUCUGAUUUCUCUCUAAAUACCUUCUG----- ............((----------((.((...------------...)).))))...................(((((((((..........)))))))))..........----- ( -13.80) >DroSim_CAF1 79369 89 + 1 UCUAAUCCAUUCUG----------GAAAAUAU------------ACUUUAUCCAACUAACUGAUUUUAAAUUCUUAGAGAGAUUUUCUGAUCUUUCUCUAAAUACCUUCUG----- ............((----------((.((...------------...)).)))).....................(((((((((....)))))))))..............----- ( -11.40) >DroEre_CAF1 87493 96 + 1 UCGCAUCCAUCUUGGCUUC-UUGGAAAAAGAUUCUCGAG-------------CAACUGAUUGAUUUUAGAUUCCUAGAGAGAUUUUCCGAUCUCUCCAUAAAUACCAUCC------ ....(((.(((...((((.-..((((.....)))).)))-------------)....))).)))............((((((((....))))))))..............------ ( -17.00) >DroYak_CAF1 89783 113 + 1 ---AGUCCAUUUUGACUUUUUUGGAUAAAUAUUUCCGGGUAUAAACUUAAACCAACUUUUUGAUUUUAAAUUCCCAGAGAUAUUUUCUUAUCUCUGUACAAAUACUUUCUGCUUUU ---((((......)))).....(((........)))(((..((((.(((((.......))))).))))....)))(((((((......)))))))..................... ( -17.60) >consensus UCUAAUCCAUUUUG_CUU__UUGGGAAAAUAU____________ACUUUAUCCAACUAACUGAUUUUAAAUUCUUAGAGAGAUUUUCUGAUCUCUCUCUAAAUACCUUCUG_____ ............................................................................((((((((....)))))))).................... ( -6.64 = -6.96 + 0.32)
Location | 13,067,053 – 13,067,152 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -15.53 |
Consensus MFE | -10.36 |
Energy contribution | -10.43 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.25 |
Mean z-score | -2.44 |
Structure conservation index | 0.67 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13067053 99 + 27905053 ACUUUAUCCAACUAACUGAUUUUAAAUUCUUAGAGAGAUUUUCUGAUCUCUCUCCAAAUAACUUCUGGAUUAUUUUAUAAAUUCGACAUACAUCCAGAC ...............................(((((((((....)))))))))..........((((((((((.((........)).))).))))))). ( -18.30) >DroSec_CAF1 87009 99 + 1 ACUUUAUCCAACUAACUGAUUUUAAAUUCUUAGAGAGAUUUUCUGAUUUCUCUCUAAAUACCUUCUGGUUUAUUGUAUAAAUUCGACAUAAAUCUAGAU .............................(((((((((..........)))))))))......((((((((((.((.........))))))).))))). ( -15.90) >DroSim_CAF1 79391 99 + 1 ACUUUAUCCAACUAACUGAUUUUAAAUUCUUAGAGAGAUUUUCUGAUCUUUCUCUAAAUACCUUCUGGUUUAUUGUAUAAAUUCGACAUAAAUCCAGAU ...............................(((((((((....)))))))))..........((((((((((.((.........))))))).))))). ( -15.80) >DroEre_CAF1 87531 89 + 1 --------CAACUGAUUGAUUUUAGAUUCCUAGAGAGAUUUUCCGAUCUCUCCAUAAAUACCAUCC--CUUGUUUUAUAAACACGACAUAAUUCCAGAU --------...(((..................((((((((....))))))))..............--(.((((.....)))).).........))).. ( -12.10) >consensus ACUUUAUCCAACUAACUGAUUUUAAAUUCUUAGAGAGAUUUUCUGAUCUCUCUCUAAAUACCUUCUGGUUUAUUGUAUAAAUUCGACAUAAAUCCAGAU ...............(((..............((((((((....))))))))...........((.(((((((...))))))).))........))).. (-10.36 = -10.43 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:14 2006