Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,063,689 – 13,063,797 |
Length | 108 |
Max. P | 0.659604 |
Location | 13,063,689 – 13,063,797 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 95.68 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -20.65 |
Energy contribution | -20.77 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.91 |
Structure conservation index | 0.90 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13063689 108 - 27905053 AUACUUAGAGUUAUAUUUCAUUCAGCAUAGGCUUUUGAUACUGUGCACCUUGUAUCUUCUUGCUAGGAUAACUAUACACAUUGCCACGAUAUAAGCCUCUAAGAUCAU ...((((((((((((((.......((((((..........)))))).(((.(((......))).)))....................)))))))..)))))))..... ( -24.40) >DroSec_CAF1 83732 108 - 1 AUACUUGGAAUUAUAUUUCAUUCAGCAUAGGCUUUCGGUACUGUGCACCUUGUAUCUUCUUGCUAGGAUAACUAUACACAUUGCCACGAUAUAAACCUCUAAGAUCAU ...((((((.(((((((......(((....)))...((((.((((.......((((((......))))))......)))).))))..)))))))...))))))..... ( -22.22) >DroSim_CAF1 76111 108 - 1 AUACUUGGAAUUAUAUUUCAUUCAGCAUAGGCUUUCGGUACUGUGCACCUUGUAUCUUCUUGCUAGGAUAACUAUACACAUUGCCAUGAUAUAAGCCGCUAAGAUCAU ...(((((..(((((((......(((....)))...((((.((((.......((((((......))))))......)))).))))..)))))))....)))))..... ( -22.32) >consensus AUACUUGGAAUUAUAUUUCAUUCAGCAUAGGCUUUCGGUACUGUGCACCUUGUAUCUUCUUGCUAGGAUAACUAUACACAUUGCCACGAUAUAAGCCUCUAAGAUCAU ...((((((.(((((((.......((((((..........)))))).(((.(((......))).)))....................)))))))...))))))..... (-20.65 = -20.77 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:13 2006