Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,056,709 – 13,056,808 |
Length | 99 |
Max. P | 0.508562 |
Location | 13,056,709 – 13,056,808 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.24 |
Mean single sequence MFE | -36.80 |
Consensus MFE | -22.16 |
Energy contribution | -23.04 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.12 |
Mean z-score | -1.85 |
Structure conservation index | 0.60 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13056709 99 - 27905053 AACGCAUUUUUUCAUUACUUUUCCACUGGCCGGGGGCCAAAACGCGAGAUUCGUGGCUAUUGGGUAUCG-------GGCAUUGGUUUGCUGG--------------CUAGUGGGUAAAAA .....................(((((((((((((((((((..(.(((.(((((.......))))).)))-------.)..))))))).))))--------------))))))))...... ( -35.20) >DroSec_CAF1 76737 97 - 1 AACGCAUUUUUUCAUUACUUUUCCACUGGCCGGGGGCCAAAACGCGAGGUCCGUGGCUAUUGGGUAUCG-------GGCAUUGGGUUGCUGG--------------CUAGUGGGUA--AA .....................((((((((((((.((((....(....)(((((..(((....)))..))-------)))....)))).))))--------------))))))))..--.. ( -39.20) >DroSim_CAF1 69176 97 - 1 AACGCAUUUUUUCAUUACUUUUCCACUGGCCGGGGGCCAAAACGCGAGGUCCGUGGCUAUUGGGUAUCG-------GGCAUUGGGUUGCUGG--------------CUAGUGGGUA--AA .....................((((((((((((.((((....(....)(((((..(((....)))..))-------)))....)))).))))--------------))))))))..--.. ( -39.20) >DroEre_CAF1 77161 110 - 1 AACGCAUUUUUUCAUUACUUUUCCACUGGCCGGCGGCCAAAAUGCGAGGCUCGUGGCUAUUGGGCAUCG--------GGAUUGGGUUGCUGGGUGCUGGAUACUGACUACUGGGUA--CA .((.((.....(((.((....((((..(.(((((((((.((.(.(((.(((((.......))))).)))--------.).)).))))))))).)..)))))).)))....)).)).--.. ( -32.90) >DroYak_CAF1 79174 118 - 1 AACGCAUUUUUUCAUUACUUUUCCACUGGCCGUGGGCCAAAAUGCGAGCUUCGUGGCUAUUGGGUAUCUGGUAUCGGGUAUUGGGUUGCUGGGUGCAGGAUACUGACUACUGGGUA--AA ..(((((((.................(((((...)))))))))))).(((..((((....(.(((((((.(((((.((((......)))).))))).))))))).)))))..))).--.. ( -37.52) >consensus AACGCAUUUUUUCAUUACUUUUCCACUGGCCGGGGGCCAAAACGCGAGGUUCGUGGCUAUUGGGUAUCG_______GGCAUUGGGUUGCUGG______________CUAGUGGGUA__AA .((.((((.............((((.((((((.(((((.........))))).)))))).))))............((((......))))..................)))).))..... (-22.16 = -23.04 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:10 2006