Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,047,555 – 13,047,645 |
Length | 90 |
Max. P | 0.580139 |
Location | 13,047,555 – 13,047,645 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 81.46 |
Mean single sequence MFE | -19.35 |
Consensus MFE | -7.74 |
Energy contribution | -8.78 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.08 |
Mean z-score | -2.30 |
Structure conservation index | 0.40 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13047555 90 - 27905053 AUGUGUAUGUGCAUAUUCAUGUAUCUACACAUUUAAAGUGCUAAAUUUAUG-AACGCAUACAAUUCGCAAUUCAAAAUCUUGAAAUGCAUU ...((((((((....((((((.((.(((((.......))).)).)).))))-))))))))))....(((.(((((....))))).)))... ( -20.90) >DroSec_CAF1 67680 90 - 1 AUGUGUGUGUGCAUAUUUAUGUAUCUACACAUUUAAAGUGGUAAAUUUAUG-AAUGCAUACAAUACGCAUGGCAAAGCCUUUAAAUGCAUA ..((((((((((((..(((((.((.(((.(((.....)))))).)).))))-))))))))).))))(((((((...))).....))))... ( -22.80) >DroSim_CAF1 59883 90 - 1 AUGUGUGUGUGCAUAUUUAUGUAUCUACACAUUUAAAGUGGUAAAUUUAUG-AAUGCAUACAAUACGCAUGGCGAAGCCUUUAAAUGCAUA ..((((((((((((..(((((.((.(((.(((.....)))))).)).))))-))))))))).))))(((((((...))).....))))... ( -22.80) >DroEre_CAF1 68346 90 - 1 AUGUGUAUAUGCAUAUUUAUGUAGCUAC-CAUUUAAAGUGCUAAAUUUAUGCAAUAAAUGCAAUACGCAAUCCGCAGUGCUUAAAUGCCUU ....(((..(((((....)))))..)))-(((((((.(..((.......((((.....))))....((.....))))..)))))))).... ( -17.00) >DroYak_CAF1 69618 85 - 1 AUCUGUAUAUGCAUAUUUAUGUACCGAC-CAUUUAAAGUGCUAAAUUAAUGCAAAAA-----AUACGCCAUCCAAAGUCUUUAAAUGCGUU ....(((((((......))))))).(((-(((((((((.(((........((.....-----....)).......)))))))))))).))) ( -13.26) >consensus AUGUGUAUGUGCAUAUUUAUGUAUCUACACAUUUAAAGUGCUAAAUUUAUG_AAUGCAUACAAUACGCAAUCCAAAGUCUUUAAAUGCAUU (((((((.((((((....)))))).)))))))........................................................... ( -7.74 = -8.78 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:03 2006