Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,872,554 – 1,872,652 |
Length | 98 |
Max. P | 0.587506 |
Location | 1,872,554 – 1,872,652 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 77.73 |
Mean single sequence MFE | -23.29 |
Consensus MFE | -15.55 |
Energy contribution | -15.58 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.06 |
Mean z-score | -1.19 |
Structure conservation index | 0.67 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1872554 98 - 27905053 G----AGCCUU--CGGAG--CCCCCGCGGAUUACAUAAAGUUGCAAAAUUUU-CUGUGACAAAUUUAUUUGUGUGCCGCAUUAUAUUGCCCCGGCGC--UCGUCCUUUA (----(((..(--(((.(--(....((((..((((((((((..((.......-.))..)).......))))))))))))........)).)))).))--))........ ( -25.51) >DroPse_CAF1 22361 86 - 1 C----GGC-GU--CGCAUUCCCCCCGCGGAUUACACAAAGUUGCAGAAUUUU-CUGUGACAAAUUUAUUUGUGUGCCGCAUUAUAUUGCUCUGG--------------- .----(((-.(--(((.........))))...(((((((((..((((....)-)))..)).......))))))))))(((......))).....--------------- ( -24.51) >DroGri_CAF1 29211 99 - 1 CGCCCAGC-AUUCCGCAC--UCCCAGCGGAUUACACAAAGUUGCAAAAUUUU-CUGUGACAAAUUUAUUUGUGUGCCGCAUUAUAUUGCAA-GCC----ACGCGCU-CU (((...((-..(((((..--.....))))).((((((((((..((.......-.))..)).......))))))))..(((......)))..-)).----..)))..-.. ( -24.71) >DroMoj_CAF1 28752 102 - 1 CGCCCAGC-AA--CGCAU--UCCCAGCGGAUUACACAAAGUUGCAAAAUUUUGCUGUGACAAAUUUAUUUGUAUGCCGCAUUAUAUUGCAC-GACACUCACGCGCU-UA .....(((-..--.(((.--.....((((..(((((((((((....))))))).))))(((((....)))))...)))).......)))..-(.....)....)))-.. ( -19.52) >DroAna_CAF1 21472 100 - 1 C----GCCCGU--CGUCU--UCCCCGCGGAUUACACAAAGUUGCAAAAUUUU-CUGUGACAAAUUUAUUUGUGUGCCGCAUUAUAUUGCUCUGGCUCUCUCUUCCUUUA .----(((.(.--.....--.....((((..((((((((((..((.......-.))..)).......))))))))))))...........).))).............. ( -20.36) >DroPer_CAF1 22666 99 - 1 C----GGC-GU--CGCAUUCCCCCCGCGGAUUACACAAAGUUGCAGAAUUUU-CUGUGACAAAUUUAUUUGUGUGCCGCAUUAUAUUGCUCUGGUUC--UGGUUCUGGC .----(((-.(--(((.........))))...(((((((((..((((....)-)))..)).......))))))))))(((......))).(..(...--.....)..). ( -25.11) >consensus C____AGC_GU__CGCAU__CCCCCGCGGAUUACACAAAGUUGCAAAAUUUU_CUGUGACAAAUUUAUUUGUGUGCCGCAUUAUAUUGCUCUGGC_C__UCGUCCU_UA .........................((((..((((((((((..((.........))..)).......)))))))))))).............................. (-15.55 = -15.58 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:36 2006