Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,040,485 – 13,040,578 |
Length | 93 |
Max. P | 0.538622 |
Location | 13,040,485 – 13,040,578 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 85.84 |
Mean single sequence MFE | -17.54 |
Consensus MFE | -11.69 |
Energy contribution | -13.06 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.05 |
Mean z-score | -1.57 |
Structure conservation index | 0.67 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538622 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13040485 93 - 27905053 GCAAGCAUUUCCGUUUCAAUAAAGUUUGUUUGCAUUUCGCGGCGAAUGGAUAAAAAUUCGCACCCAUUCCAAGGUUCAUUAACCUUUAAAAAA (((((((...................)))))))........((((((........)))))).........((((((....))))))....... ( -18.61) >DroSec_CAF1 60609 93 - 1 GCAAGCAUUUCCGUUUCAAUAAAGUUUGUUUGCAUUCCGCAGCGAAUUAACAAAAAUUCGCACCCAUUCCAAGGUUCAUUAACCUUUAAAAAA (((((((...................)))))))........(((((((......))))))).........((((((....))))))....... ( -19.01) >DroSim_CAF1 52800 92 - 1 GCAAGCAAUUCCGUUUCAAUAAAGUUUGUUUGCAUUCCGCAGCGAAUGAACAAAAAUUCGCACCCAUUCCGAGGUUCAUUAAC-UUAAAAAAA ((((((((.................))))))))........((((((........))))))(((........)))........-......... ( -16.93) >DroYak_CAF1 62431 91 - 1 GCAAGCAUUUCCGCUACAAUGAAGACUGUUUACAUUCCGCAGCAAAUGGA-AAAAAGUCGCACCA-AUCCAGGGUUCAUUAACCGCAGAACAA ((.(((......)))..((((((((((.......(((((.......))))-)...))))...((.-.....)).))))))....))....... ( -15.60) >consensus GCAAGCAUUUCCGUUUCAAUAAAGUUUGUUUGCAUUCCGCAGCGAAUGAACAAAAAUUCGCACCCAUUCCAAGGUUCAUUAACCUUAAAAAAA (((((((...................)))))))........((((((........)))))).........((((((....))))))....... (-11.69 = -13.06 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:58 2006