Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,033,457 – 13,033,559 |
Length | 102 |
Max. P | 0.963748 |
Location | 13,033,457 – 13,033,559 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 77.40 |
Mean single sequence MFE | -22.47 |
Consensus MFE | -13.06 |
Energy contribution | -15.03 |
Covariance contribution | 1.97 |
Combinations/Pair | 1.09 |
Mean z-score | -2.36 |
Structure conservation index | 0.58 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.963748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13033457 102 - 27905053 AUGCUGAAAUGCUAAAAUUGCUA---------------AAAUGCCCAGAUCGGCAGUCAUAAGAAUUUCCAUUUUAUGAUAAGGCCACAAUUUUAUUGCACACCCAACUGGAGAAUC ..((......((.......))..---------------....))((((...(((.(((((((((.......)))))))))...))).((((...)))).........))))...... ( -19.00) >DroSec_CAF1 53511 93 - 1 AUGCUGAAAU---------GCUA---------------AAAUGCCCAGAUCGGCAGUCAUAAGAAUUUCCAUUUUAUGAUAAGGCCGCAAUUUUAUUGCACACCCAACUGGGGAAUC ..((......---------))..---------------...(.(((((...(((.(((((((((.......)))))))))...)))(((((...)))))........))))).)... ( -25.80) >DroSim_CAF1 46391 93 - 1 AUGCUAACAU---------GCUA---------------AAAUGCCCAGAUCGGCAGUCAUAAGAAUUUCCAUUUUAUGAUAAGGCCGCAAUUUUAUUGCACACCCAACUGGGGAAUC ..((......---------))..---------------...(.(((((...(((.(((((((((.......)))))))))...)))(((((...)))))........))))).)... ( -25.80) >DroEre_CAF1 53879 79 - 1 --------------------------------------AAAUGUGCAGAUCGGCAGUCAUAAGCAUUUCCAUUUUAUGAUAAGGCCGCAAUUUUAUUGCACACCCAACUGGGGAAUC --------------------------------------...(((((((((((((.((((((((.........))))))))...))))..)))....))))))(((....)))..... ( -21.70) >DroYak_CAF1 55249 117 - 1 AUGCUAAAAUGCUCAAAAUGCUGAAAAGCUGAAAAGCUAAAUGCCCAGAUCGGCAGUCAUAAGAAUUUCCAUUUUAUGAUAAGGCCGCAAUUUUAUUGCACACCCAACUGGGGAAUC ..((......))..............((((....))))...(.(((((...(((.(((((((((.......)))))))))...)))(((((...)))))........))))).)... ( -31.20) >DroAna_CAF1 53220 85 - 1 -------AAU---------GCCG---------------AGAUGCUCAAAUCAACAGACAUAAGAAUUUCCAUUUUAUGAUAAGACCACAAUUUUAUUACACACACAACCGG-UAACC -------..(---------((((---------------.(((......)))......(((((((.......)))))))..............................)))-))... ( -11.30) >consensus AUGCU_AAAU_________GCUA_______________AAAUGCCCAGAUCGGCAGUCAUAAGAAUUUCCAUUUUAUGAUAAGGCCGCAAUUUUAUUGCACACCCAACUGGGGAAUC ...........................................(((((...(((.(((((((((.......)))))))))...)))(((((...)))))........)))))..... (-13.06 = -15.03 + 1.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:55 2006