Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,032,493 – 13,032,586 |
Length | 93 |
Max. P | 0.766537 |
Location | 13,032,493 – 13,032,586 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -16.95 |
Consensus MFE | -14.51 |
Energy contribution | -15.07 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.09 |
Mean z-score | -2.07 |
Structure conservation index | 0.86 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766537 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13032493 93 + 27905053 ACUCCCUUGCACUGGGAAAAUCAAGGGAAUAAGGACUUUAGAACAACACAAUAUAUAAGAUGUAUAACAUUUAUUGAAUACCAUUAAAGUUAA ..(((((((............))))))).....((((((((.......(((((.....((((.....))))))))).......)))))))).. ( -15.84) >DroSec_CAF1 52551 93 + 1 AAUCCCUUGCACUGGAAAAAGCAAGGGAAUAAGGACUUUGGAAUAAAAGAAUAUACAAGAUGUAUAACAUAUAUUGAAAACCAUUAAUGUUUA ..((((((((..(....)..))))))))....((.((((......))))..(((((.....)))))..............))........... ( -19.90) >DroSim_CAF1 45423 93 + 1 ACUCCCUUGCACUGGGAAAAGCAAGGUAAUAAGGACUUUGGAAUAAGAGAAUAUACAAGAUGUAUAACAUAUAUUGAGAACGAUUAAAGUUAA ....((((((..........)))))).......((((((((..........(((((.....))))).((.....)).......)))))))).. ( -15.10) >consensus ACUCCCUUGCACUGGGAAAAGCAAGGGAAUAAGGACUUUGGAAUAAAAGAAUAUACAAGAUGUAUAACAUAUAUUGAAAACCAUUAAAGUUAA ..((((((((..........)))))))).....((((((((..........(((((.....))))).((.....)).......)))))))).. (-14.51 = -15.07 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:54 2006