Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,018,653 – 13,018,748 |
Length | 95 |
Max. P | 0.547777 |
Location | 13,018,653 – 13,018,748 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 81.48 |
Mean single sequence MFE | -26.98 |
Consensus MFE | -14.94 |
Energy contribution | -16.63 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.21 |
Mean z-score | -2.09 |
Structure conservation index | 0.55 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547777 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13018653 95 + 27905053 AGAAAUACUAAAUGCCCAAAAGGGUAUGC-----AUUUGA--UUCCUGACUUCGAUUC--AGGAGACUGUUGUUAAAUUUCGGGAAUGCGAUUCGCAUGGGAAU .......(((.((((((....))))))((-----..((((--(((((((.((..((.(--((....)))..))..))..)))))))).)))...)).))).... ( -27.30) >DroSec_CAF1 38726 95 + 1 AACAAUACAAAAUGCCCAAAAGGGUAUGC-----AUUUGA--UUCCUGACUUCGAUUC--AGGAGACUGUUGUUAAAUUUCGGGAAUGCGAUUCGCAUGGGAAU ...........((((((....))))))((-----..((((--(((((((.((..((.(--((....)))..))..))..)))))))).)))...))........ ( -26.40) >DroEre_CAF1 39322 100 + 1 AAAAAUACUUAAUACCCAAAAGGGUGUGU-UGUGAUUUGAUUUUCCUGCCUUCGAUUUCCUGGG---UGCUGUUAAAUUUCGGGAAUGCGAUUCGCUUGGGAAU .....(((...((((((....))))))..-.))).......(((((.((..(((..((((((((---...........))))))))..)))...))..))))). ( -27.10) >DroYak_CAF1 40043 101 + 1 AAAAAUAACUACUACCCAGAAGGGUAUGCAUGCGAUUUGAAUUUCCAGCCUUCGAUUUCCUGGA---UGUUCUUAAAUUUCUGGAAUGCGAUUCGCAUGGGAAU ............(((((....)))))(.(((((((.(((...((((((.....(((((...((.---....)).))))).))))))..))).))))))).)... ( -27.10) >consensus AAAAAUACUAAAUACCCAAAAGGGUAUGC_____AUUUGA__UUCCUGACUUCGAUUC__AGGA___UGUUGUUAAAUUUCGGGAAUGCGAUUCGCAUGGGAAU ...........((((((....))))))....((((.(((...(((((((((((........))))..............)))))))..))).))))........ (-14.94 = -16.63 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:47 2006