Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,872,393 – 1,872,526 |
Length | 133 |
Max. P | 0.831653 |
Location | 1,872,393 – 1,872,502 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 85.42 |
Mean single sequence MFE | -32.22 |
Consensus MFE | -23.58 |
Energy contribution | -24.08 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.10 |
Mean z-score | -2.20 |
Structure conservation index | 0.73 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521434 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1872393 109 + 27905053 UUUAAUUUCGGGACAGC----GGCUGAGUCAAGAAACGGAAUAGCUGCAAUGGCGACAGCAGCUGUUGAGCUACUUUAACAGUCUGCUAGCUCAUUAAGUUCUCACAAACACA .........(((((.((----(((((..((.......))..)))))))((((((...(((((((((((((....)))))))).))))).)).))))..))))).......... ( -34.50) >DroPse_CAF1 22199 109 + 1 UUUAAUUUCGAGACAGCGGGCGGCUGAGUCAAGCAAUGGAAUAACUGCAAUGGCGACAGCAGCUGUUGAGCUACUUUAACAGUCUGCUAGCUCAUUAAGUUUUCCCGCA---- ...............(((((..(((......)))........((((..((((((...(((((((((((((....)))))))).))))).)).)))).))))..))))).---- ( -35.10) >DroWil_CAF1 26657 96 + 1 UUUAAUUUCAAGACAGC-----------------AACGGCUGAGCUGCAAUGGCGACAGCAGCUGUUGAGCUACUUUAACAGUCUGCUAGCUCAUUAAGUUUUCACACACAAA .........((((((((-----------------....)))(((((((....))...(((((((((((((....)))))))).)))))))))).....))))).......... ( -27.00) >DroYak_CAF1 36661 109 + 1 UUUAAUUUCGGGACAGC----GGCUGAGUCAAGAAACGGAAUAGCUGCAAUGGCGACAGCAGCUGUUGAGCUACUUUAACAGUCUGCUAGCUCAUUAAGUUCUCACAAACACA .........(((((.((----(((((..((.......))..)))))))((((((...(((((((((((((....)))))))).))))).)).))))..))))).......... ( -34.50) >DroAna_CAF1 21324 109 + 1 UUUAAUUUCGCGACAGA----GGCUGGUUCAAGAAAUGGAAUGACUGCAAUGGCGACAGCAGCUGUUGAGCUACUUUAACAGUCUGCUAGCUCAUUAAGUUCCCACACACACA ....(((((..(((...----.....)))...)))))((...((((..((((((...(((((((((((((....)))))))).))))).)).)))).)))).))......... ( -27.10) >DroPer_CAF1 22493 109 + 1 UUUAAUUUCGAGACAGCGGGCGGCUGAGUCAAGCAAUGGAAUAACUGCAAUGGCGACAGCAGCUGUUGAGCUACUUUAACAGUCUGCUAGCUCAUUAAGUUUUCCCGCA---- ...............(((((..(((......)))........((((..((((((...(((((((((((((....)))))))).))))).)).)))).))))..))))).---- ( -35.10) >consensus UUUAAUUUCGAGACAGC____GGCUGAGUCAAGAAACGGAAUAACUGCAAUGGCGACAGCAGCUGUUGAGCUACUUUAACAGUCUGCUAGCUCAUUAAGUUCUCACACACACA .........((((((((.....)))).................(((..((((((...(((((((((((((....)))))))).))))).)).)))).)))))))......... (-23.58 = -24.08 + 0.50)
Location | 1,872,426 – 1,872,526 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 83.60 |
Mean single sequence MFE | -27.06 |
Consensus MFE | -22.75 |
Energy contribution | -22.17 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.12 |
Mean z-score | -1.97 |
Structure conservation index | 0.84 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831653 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1872426 100 + 27905053 GGAAUAGCUGCAAUGGCGACAGCAGCUGUUGAGCUACUUUAACAGUCUGCUAGCUCAUUAAGUUCUCACAAACACACACAAGCACAAGCACACACGCAC------------A---- ......(((..((((((...(((((((((((((....)))))))).))))).)).))))..(((......))).......)))....((......))..------------.---- ( -23.80) >DroPse_CAF1 22236 98 + 1 GGAAUAACUGCAAUGGCGACAGCAGCUGUUGAGCUACUUUAACAGUCUGCUAGCUCAUUAAGUUUUCCCGCA------CAGUCAUACGCAUAUACGUAC------------AGGAA ((((.((((..((((((...(((((((((((((....)))))))).))))).)).)))).))))))))....------...((.((((......)))).------------..)). ( -28.60) >DroSec_CAF1 30499 104 + 1 GGAAUAGCUGCAAUGGCGACAGCAGCUGUUGAGCUACUUUAACAGUCUGCUAGCUCAUUAAGUUCUCACAAACACACACAAGCACAGGCACACACGCAC------------AUGCA .((..((((..((((((...(((((((((((((....)))))))).))))).)).)))).)))).))..............(((...((......))..------------.))). ( -27.60) >DroSim_CAF1 31116 104 + 1 GGAAUAGCUGCAAUGGCGACAGCAGCUGUUGAGCUACUUUAACAGUCUGCUAGCUCAUUAAGUUCUCACAAACACACACAAGCGCAGGCACACACGCAC------------AUGCA ......(((..((((((...(((((((((((((....)))))))).))))).)).))))..(((......))).......)))(((.((......))..------------.))). ( -28.20) >DroEre_CAF1 30957 112 + 1 GGAAUAGCUGCAAUGGCGACAGCAGCUGUUGAGCUACUUUAACAGUCUGCUAGCUCAUUAAGUUCUCACCAACACA--CAAGCACAGGCA--CAGGCACAGCCACACACACAUGCA ((...((((..((((((...(((((((((((((....)))))))).))))).)).)))).))))....))......--...(((......--..(((...))).........))). ( -27.63) >DroPer_CAF1 22530 98 + 1 GGAAUAACUGCAAUGGCGACAGCAGCUGUUGAGCUACUUUAACAGUCUGCUAGCUCAUUAAGUUUUCCCGCA------CAAUCAUACACAUAUACGUAC------------AGGAA ((((.((((..((((((...(((((((((((((....)))))))).))))).)).)))).))))))))....------...((.(((........))).------------..)). ( -26.50) >consensus GGAAUAGCUGCAAUGGCGACAGCAGCUGUUGAGCUACUUUAACAGUCUGCUAGCUCAUUAAGUUCUCACAAACACA__CAAGCACAGGCACACACGCAC____________AUGCA .....((((..((((((...(((((((((((((....)))))))).))))).)).)))).)))).......................((......))................... (-22.75 = -22.17 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:35 2006