Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,017,573 – 13,017,665 |
Length | 92 |
Max. P | 0.787713 |
Location | 13,017,573 – 13,017,665 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 91.74 |
Mean single sequence MFE | -21.82 |
Consensus MFE | -17.00 |
Energy contribution | -17.20 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.14 |
Mean z-score | -1.78 |
Structure conservation index | 0.78 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.787713 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13017573 92 + 27905053 GGCGGAUUUAAGCAAAUAUCCACUGUAUUUGCAUAAAUUCAUGUGCUCUUGCUGUGGAGUAAAACAAAUGUGAUGUUGUACUUUAAGUUAAA ((((((((((.((((((((.....)))))))).)))))))....((....))..(((((((.((((.......)))).))))))).)))... ( -21.30) >DroSec_CAF1 37632 92 + 1 GGCGGAUUUAAGCAAAUAUCCACUGUAUCUGCAUAAAGUCAUGUGCACUUGUUGUAGAGUAAAACAAAUGUGAUGUUGUGCUUUAAGUUAAA ....((((((((((((((((((.(((.((((((..(((((....).))))..)))))).....)))..)).)))))).))).)))))))... ( -20.20) >DroSim_CAF1 30087 92 + 1 GGCGGAUUUAAGCAAAUAUCCACUGUAUCUGCAUAAAUUCAUCUGCACUUGCUGUGGAGUAAAACAAAUGUGAUGUUGUGCUUUAAGUUAAA ....((((((((((....(((((.(((..((((..........))))..))).)))))....((((.......)))).))).)))))))... ( -20.50) >DroEre_CAF1 38164 91 + 1 UGUGGACUAAAGCAUAUAGCCACUGUAUUUGCAUAAAUUCAUGUGCUC-UGCUGUGGAGUAAAACAAAUGUGAUGUUGUGCUUUAAGUUAAA ....(((((((((((....((((.(((...(((((......)))))..-))).)))).....((((.......))))))))))).))))... ( -22.90) >DroYak_CAF1 38862 92 + 1 UGUGGAUUUAAGCAAAUGUCUACUGUAUCUGCAUAAAUUCAUGUGCUCUUGCAGUGGAGUAAAACAAAUGUGAUGUUGUGCUUUAAGUUAAA ....((((((((((....(((((((((...(((((......)))))...)))))))))....((((.......)))).))).)))))))... ( -24.20) >consensus GGCGGAUUUAAGCAAAUAUCCACUGUAUCUGCAUAAAUUCAUGUGCUCUUGCUGUGGAGUAAAACAAAUGUGAUGUUGUGCUUUAAGUUAAA ....((((((((......(((((.(((...(((((......)))))...))).)))))(((.((((.......)))).)))))))))))... (-17.00 = -17.20 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:46 2006