Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,017,245 – 13,017,340 |
Length | 95 |
Max. P | 0.838307 |
Location | 13,017,245 – 13,017,340 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 93.25 |
Mean single sequence MFE | -18.62 |
Consensus MFE | -17.04 |
Energy contribution | -16.52 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.18 |
Mean z-score | -1.31 |
Structure conservation index | 0.92 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13017245 95 - 27905053 UAUUAAAUAGUUUUGCAUUCGAAAUUUAUUUCGGUCAAAAAUCUCCUUUUUGGGGAGCAAUAAUUUUUGGCUUUUGGCACACGUUUCACACACGC .........((..(((...(((((....)))))((((((((((((((.....))))).....))))))))).....))).))............. ( -18.10) >DroSec_CAF1 37310 95 - 1 UAUUAAAUAGUUUUGCAUUCGAAAUUUAUUUCGGUCAAAAAUCUCCUUUUUGGGGAGCAAUAAUUUUUGGCUUUUGGCACAAGUUUCACACACGC .............(((...(((((....)))))((((((((((((((.....))))).....))))))))).....)))................ ( -17.90) >DroSim_CAF1 29764 95 - 1 UAUUAAAUAGUUUUGCAUUCGAAAUUUAUUUCGGUCAAAAAUCUCCUUUUUGGGGAGCAAUAAUUUUUGGCUUUUGGCACACGUUUCACACACGC .........((..(((...(((((....)))))((((((((((((((.....))))).....))))))))).....))).))............. ( -18.10) >DroEre_CAF1 37866 94 - 1 UAUUAAAUAGUUUUGCAUUCGAAAUUUAUUUCGGCCAAAAAUCUCCUUUUUGGGGAGCAAUAAUUUUUGGCUUUUGGCACACGU-UCACACACAC .........((..(((...(((((....)))))((((((((((((((.....))))).....))))))))).....))).))..-.......... ( -20.80) >DroYak_CAF1 38552 93 - 1 UAUUAAAUAGUUUUGCAUUCGAAAUUUAUUUCGGUCAAAAAUCUCCUU-UUGGGGAGCAAUAAUUUUUGGCUUUUGGCACACGU-UCACACACGC .........((..(((...(((((....)))))((((((((((((((.-...))))).....))))))))).....))).))..-.......... ( -18.10) >DroAna_CAF1 38051 91 - 1 UAUUAAAUAGUUUUGCAUUCGAAAUUUAUUUCGGUCAAAAAUCUCCAUUUCUUGGGGCAAUAAUUUUUGGUUUUUGCCACAAA----ACACUCUC .........((((((.....((((....))))((.((((((((((((.....)))))(((......)))))))))))).))))----))...... ( -18.70) >consensus UAUUAAAUAGUUUUGCAUUCGAAAUUUAUUUCGGUCAAAAAUCUCCUUUUUGGGGAGCAAUAAUUUUUGGCUUUUGGCACACGU_UCACACACGC .............(((...(((((....)))))((((((((((((((.....))))).....))))))))).....)))................ (-17.04 = -16.52 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:45 2006