Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,016,079 – 13,016,169 |
Length | 90 |
Max. P | 0.994944 |
Location | 13,016,079 – 13,016,169 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 90.89 |
Mean single sequence MFE | -22.72 |
Consensus MFE | -20.30 |
Energy contribution | -20.14 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.23 |
Mean z-score | -2.02 |
Structure conservation index | 0.89 |
SVM decision value | 2.53 |
SVM RNA-class probability | 0.994944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13016079 90 - 27905053 CUGGAUAUUCCUUGGUGUACCAACACCAUUUGAAACCGCUACGUGUAUAUAUAAAUAAAUGUGUGAGCGUGCGGUAUACGAAUUUAUUUU ..((.....)).((((((....))))))((((..(((((.((((.(((((((......))))))).)))))))))...))))........ ( -26.10) >DroSec_CAF1 36146 90 - 1 CUGAAUAUUCCUUGGUUUACCAACACCAUUUGAAACCGCUGCGUGCAUAUAUAAAUAAAUGUGUGAGGGUGCGUUAUAAGAAUUUAUUUU .(((((.....((((....)))).....((((.(((((((.((..(((.((....)).)))..))..)))).))).)))).))))).... ( -13.90) >DroSim_CAF1 28595 90 - 1 CUGAAUAUUCCCUGGUGUACCAACACCAUUUGAAACCGCUGCGUGCAUAUAUAAAUAAAUGUGUGAGCGUGCGGUACACGAAUUUAUUUU .(((((.(((..((((((....))))))...)))(((((.((((.(((((((......))))))).)))))))))......))))).... ( -26.90) >DroEre_CAF1 36646 90 - 1 CUAGAUUUUCCUUGGUGUGCCAGCAUCAUUUGGAAGCACUACGUGCAUAUAUAAAUAAAUGUGUGAGCGUGCGGUAUACGAAUUUAUUUU ...........((.(((((((.((.((.....)).))..(((((.(((((((......))))))).))))).))))))).))........ ( -23.50) >DroYak_CAF1 37344 90 - 1 CUAGAUUUUCCUUGGUGUACCAACACCAUUUGAAACCACUACGUGCAUAUAUAAAUGAAUGUGUGAGCGUGCGGUAUACGAAUUUAUUUU .(((((((((..((((((....))))))...)).(((.(.((((.(((((((......))))))).))))).)))....))))))).... ( -23.20) >consensus CUGGAUAUUCCUUGGUGUACCAACACCAUUUGAAACCGCUACGUGCAUAUAUAAAUAAAUGUGUGAGCGUGCGGUAUACGAAUUUAUUUU .(((((.(((..((((((....))))))...)))(((((.((((.(((((((......))))))).)))))))))......))))).... (-20.30 = -20.14 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:42 2006