Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,997,143 – 12,997,238 |
Length | 95 |
Max. P | 0.608398 |
Location | 12,997,143 – 12,997,238 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 79.36 |
Mean single sequence MFE | -15.25 |
Consensus MFE | -13.85 |
Energy contribution | -13.97 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -0.31 |
Structure conservation index | 0.91 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12997143 95 + 27905053 AGUAUUUUAAAUAGACAAACAAAAAAUAUACCAUUGAUGGCUCUAAAGUGUGGAGUUUAAAGGCAAGGUACCCUCUUUUAGUGAUCAAUGAUGGA .(((((((..............)))))))..(((((((.(((..((((.(.(((.(((......))).).))).)))).))).)))))))..... ( -16.34) >DroSec_CAF1 17452 75 + 1 --------------------CAAAAAUAUACCAUUGAUGGCUCUUAAGUGUGGAGUUUAAAUGCAAGGGUCUCUCUUUUAGUGAUCAAUGAUGGA --------------------...........(((((((.(((...(((.(.(((.(((.......))).)))).)))..))).)))))))..... ( -14.70) >DroSim_CAF1 9657 91 + 1 AGUAUUUCAAAAAGAC----AAAAAAUAUACCAUUGAUGGCUCUUAAGUGUGGAGUUUAAAUGCAAGGGUCUCUCUUUUAGUGAUCAAUGAUUGG ................----...........(((((((.(((...(((.(.(((.(((.......))).)))).)))..))).)))))))..... ( -14.70) >consensus AGUAUUU_AAA_AGAC____AAAAAAUAUACCAUUGAUGGCUCUUAAGUGUGGAGUUUAAAUGCAAGGGUCUCUCUUUUAGUGAUCAAUGAUGGA ...............................(((((((.(((...(((.(.(((.(((.......))).)))).)))..))).)))))))..... (-13.85 = -13.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:35 2006