Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,870,275 – 1,870,370 |
Length | 95 |
Max. P | 0.500000 |
Location | 1,870,275 – 1,870,370 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 79.79 |
Mean single sequence MFE | -28.85 |
Consensus MFE | -12.99 |
Energy contribution | -13.43 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.25 |
Mean z-score | -2.28 |
Structure conservation index | 0.45 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1870275 95 - 27905053 ----CGGGGACUUAGAGCCAAUCAAAUGCGGCUCGUGGGGACGGGGGGAAACCGCAGAGAGCAGUCGG-----CCGGCAUCUCUCAAUAAUAAAAGUAAACAAA ----...(..(((((((((..........))))).))))..).(.((....)).).(((((..(((..-----..)))..)))))................... ( -28.40) >DroSec_CAF1 28278 94 - 1 ----CGGGGACUUAGGGGCAAUCAAAUGCGGCUCGUGGGGCCGG-GGGAAACCGCAGGGAGGAGUCGG-----CCGGCAUCUCUCAAUAAUAAAAGUAAACAAA ----.(...((((....((.........(((((.....))))).-((....)))).(((((..(((..-----..)))..)))))........))))...)... ( -29.60) >DroSim_CAF1 28875 94 - 1 ----CGGGGACUUAGGGCCAAUCAAAUGCGGCUCGUGGGGCCGG-GGGAAACCGCAGGGAGGAGUUGG-----CCGGCAUCUCUCAAUAAUAAAAGUAAACAAA ----.(((((.....((((((((...(((((((.....))))..-((....))))).....)).))))-----))....))))).................... ( -29.90) >DroEre_CAF1 28581 90 - 1 ----UGGGGACUUAGAGCCAAUCAAAUACGGCUCGUGGG-CCG--GGAAAACCGCAGAGAGCAGUCGG-----CCGGCAUC--UCAAUAAUAAAAGUAAACAAA ----(((((.....(((((..........)))))((.((-(((--((....))((.....))...)))-----)).)).))--))).................. ( -28.10) >DroWil_CAF1 22781 84 - 1 ----UUACAGCUUAGAGCCAAUCAAACAUGGCUAACGU-------UGGAUGCC--AGACAGACUAUGC-----CAGGCAUC--UCAAUAAUAAAAGUAAACAAA ----((((.......(((((........)))))...((-------((((((((--.(.((.....)).-----).))))))--.)))).......))))..... ( -21.00) >DroYak_CAF1 34095 100 - 1 CGUCCGUGGAUUUAGAGCCAAUCAAAUACGGCUCGUGGGUCCG--GGGAAACCGCAGAGAGCAGUCGGCUGGGCCGGCAUC--UCAAUAAUAAAAGUAAACAAA ..(((.(((((((((((((..........))))).))))))))--.))).......((((...((((((...)))))).))--))................... ( -36.10) >consensus ____CGGGGACUUAGAGCCAAUCAAAUACGGCUCGUGGGGCCG__GGGAAACCGCAGAGAGCAGUCGG_____CCGGCAUC__UCAAUAAUAAAAGUAAACAAA .........((((.(((((..........)))))...........((....))..........(((((.....)))))...............))))....... (-12.99 = -13.43 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:33 2006