Locus 4938

Sequence ID 3R_DroMel_CAF1
Location 12,986,700 – 12,986,794
Length 94
Max. P 0.883593
window8081

overview

Window 1

Location 12,986,700 – 12,986,794
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 90.28
Mean single sequence MFE -20.45
Consensus MFE -18.37
Energy contribution -17.57
Covariance contribution -0.80
Combinations/Pair 1.22
Mean z-score -1.64
Structure conservation index 0.90
SVM decision value 0.93
SVM RNA-class probability 0.883593
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12986700 94 + 27905053
GCCAAUGCUUUAUGGCCAGAAUGGUCGGAGGCCAUAUAUUUCUUAUGAAAAUUGCCAAAUUUAAUGGCCAUAAAAUUUAAUUAUAGCAAAUGUG
.....(((((((((((((..(((((.....)))))...((((....))))..............)))))))))...........))))...... ( -22.50)
>DroPse_CAF1 14782 94 + 1
GCCAAUGGUUUAUGGCUCAAAUGGCCCGGAGCCAUAUAUUCCCGAUGAAAAUUGCCAAAUAUAAUGGUCAUAAAAUUUAAUUAUACCAAAUGUG
((((.((((((..((((.....))))..))))))((((((..((((....))))...)))))).)))).......................... ( -19.30)
>DroEre_CAF1 7407 94 + 1
GCCAAUGCUUUAUGGCUAGAAUGGUCGGAGGCCAUAUAUUUCUUAUGAAAAUUGCCAAAUUUAAUGGCCAUAAAAUUUAAUUAUAGCAAAUGUG
.....(((((((((((((..(((((.....)))))...((((....))))..............)))))))))...........))))...... ( -20.20)
>DroYak_CAF1 7588 94 + 1
GCCAAUGCUUUAUGGCCAGAAUGGUCGUAGGCCAUAUAUUUCUUAUGAAAAUUGCCAAAUUUAAUGGCCAUAAAAUUUAAUUAUAGCAAAUGUG
.....(((((((((((((..(((((.....)))))...((((....))))..............)))))))))...........))))...... ( -22.50)
>DroAna_CAF1 7138 94 + 1
GCCAAUGGUUUAUGGCUAAAAUUGCCGGAGGCAAUAUAUUCCUUAUGAAAAUUGCCGAAUUUAAUGGCCAUAAAAUUUAAUUAUACCAAAUGUG
.....(((((((((((((..((((((...))))))..((((...((....))....))))....)))))))))...........))))...... ( -18.90)
>DroPer_CAF1 80711 94 + 1
GCCAAUGGUUUAUGGCUCAAAUGGCCCGGAGCCAUAUAUUCCCGAUGAAAAUUGCCAAAUAUAAUGGUCAUAAAAUUUAAUUAUACCAAAUGUG
((((.((((((..((((.....))))..))))))((((((..((((....))))...)))))).)))).......................... ( -19.30)
>consensus
GCCAAUGCUUUAUGGCUAAAAUGGCCGGAGGCCAUAUAUUCCUUAUGAAAAUUGCCAAAUUUAAUGGCCAUAAAAUUUAAUUAUACCAAAUGUG
.....(((((((((((((..(((((.....))))).............(((((....)))))..)))))))))...........))))...... (-18.37 = -17.57 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:30 2006