Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,979,245 – 12,979,341 |
Length | 96 |
Max. P | 0.529837 |
Location | 12,979,245 – 12,979,341 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 80.13 |
Mean single sequence MFE | -33.93 |
Consensus MFE | -19.26 |
Energy contribution | -18.15 |
Covariance contribution | -1.11 |
Combinations/Pair | 1.37 |
Mean z-score | -1.76 |
Structure conservation index | 0.57 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529837 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12979245 96 - 27905053 CAAGCUGCCCAACUGCACGCCCACCACCUACAAUGUGGGCGGAAACGUGCCGCUGGAGUGGCUCAACAUUGGCCAUAGACGCCGCAGCAUGCGCAU--- ...((((((((.(.((((((((((..........))))))(....))))).).))).(((((.((....))))))).......)))))........--- ( -39.20) >DroVir_CAF1 2 99 - 1 AAAGCUAACCAGCUGCACCCCAGCCACAUACAAUGUGGGCGAUAGUGUGCCGCUGGAGUGGGUCAACAUUGGCCACAGACGUCGCAAUCUUCGCAUCUA ...((...(((((.(((((...(((.(((.....))))))....).)))).))))).((((.(((....))))))).......)).............. ( -31.00) >DroGri_CAF1 2 99 - 1 AAAAUUGACGAGCUGCAUCCCAGCCACAUACAAUGUGGGCGAGAGUGUGCCGCUGGAGUGGGUGAACAUUGGACACAGACGUCGCAGUCUGCGCAUUUA .....((.((((((((...((((((((((...)))))((((......)))))))))((((......)))).(((......))))))).)).)))).... ( -29.80) >DroEre_CAF1 2 99 - 1 CAAGCUGCUCAACUGCAGUCCCACCACCUACAAUGUGGGCGGAAACGUGCCGCUGGAGUGGCUCAACAUUGGCCAUAGACGCCGCAGCAUGCGCAUUUA ...(((((...(((.((((....((((.......))))(((....)))...)))).)))(((.((....))))).........)))))........... ( -31.90) >DroWil_CAF1 2 99 - 1 GAAACUAGUGAACUGCACACCUACCGCCUACAAUGUGGGCGGUAAUGUGCCACUGGAGUGGCUAAAUCUUGGUCACAGACGUCGCAAUCUUCGCAUUUG ....((((((....(((((..((((((((((...)))))))))).))))))))))).(((((((.....))))))).......((.......))..... ( -38.60) >DroAna_CAF1 2 99 - 1 GAAGCUGCUCAACUGCACUCCAACCACCUACAACGUGGGUGGCAACGUGCCGUUGGAGUGGAUCAACAUUGGCCAUAGACGCCGCAACCUGCGCAUUUA ...((.((.....(((((((((((.((((((...))))))(((.....)))))))))))...........(((.......))))))....))))..... ( -33.10) >consensus AAAGCUGCCCAACUGCACCCCAACCACCUACAAUGUGGGCGGAAACGUGCCGCUGGAGUGGCUCAACAUUGGCCACAGACGCCGCAACCUGCGCAUUUA .............(((.......((((.......))))((((....((((((.((...........)).))).))).....)))).......))).... (-19.26 = -18.15 + -1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:27 2006