Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,970,554 – 12,970,699 |
Length | 145 |
Max. P | 0.716085 |
Location | 12,970,554 – 12,970,666 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.96 |
Mean single sequence MFE | -24.28 |
Consensus MFE | -14.18 |
Energy contribution | -14.55 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.06 |
Mean z-score | -1.80 |
Structure conservation index | 0.58 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12970554 112 + 27905053 AACACGCGUGCUAAACGAACUCAAGCCAUCGGUCUCACAGAAACGAUUGUUAAAAUACUUGCUGUAGGCCAAGAUAAUAAUGUUAAGUAUAAUGACCCACACA--UAGU------AGUAC .......((((((.................(((((.((((.....(((.....))).....))))))))).........((((...((......))....)))--)..)------))))) ( -17.30) >DroSim_CAF1 10740 101 + 1 AACACGCGUGCUAAACGAACU--------------CACAGAAAUGAUUGUUAAAAUACUUGCUGUGGGCCAAGACAAUAAUGUUAAGUAUAAUGGCCCACACA--UAGUA---GUAGUAC .......((((((....(((.--------------..((....))...)))....((((((.(((((((((..((...........))....)))))))))))--.))))---.)))))) ( -26.70) >DroEre_CAF1 10526 107 + 1 AACACACGUGCUAUACGAACUCAAUCCAUCGGUCUCACAGAAAUGGUUGUUAAAAUACUUGCUGUGGGCCAAGGCAGU----------UAAUUGGCCCACACACAUACAC---GUAGUAC .......(((((((.......(((.((((...((.....)).)))))))..........((.((((((((((......----------...)))))))))))).......---))))))) ( -28.90) >DroYak_CAF1 10679 110 + 1 AACACGCGUGCUAUACCAACUUAAUCCAUCGGUCUCACAGAAAUGGUUGUUAAAAUACUUUCUUUGGGCCAAGACAAU----------AUAAAGGCCCAAACACAUACACGACGUAGUAC .(((((((((.(((......(((((((((...((.....)).))))..))))).........((((((((........----------.....))))))))...))))))).))).)).. ( -24.22) >consensus AACACGCGUGCUAAACGAACUCAAUCCAUCGGUCUCACAGAAAUGAUUGUUAAAAUACUUGCUGUGGGCCAAGACAAU__________AUAAUGGCCCACACA__UACAC___GUAGUAC .......((((((.......................((((......))))............((((((((.......................)))))))).............)))))) (-14.18 = -14.55 + 0.37)
Location | 12,970,594 – 12,970,699 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 80.21 |
Mean single sequence MFE | -21.60 |
Consensus MFE | -14.48 |
Energy contribution | -15.47 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.14 |
Mean z-score | -1.78 |
Structure conservation index | 0.67 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716085 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12970594 105 - 27905053 ACUUCUUAUGAAUGCCGCGCUUUCUAGACCUAUGUACU------ACUA--UGUGUGGGUCAUUAUACUUAACAUUAUUAUCUUGGCCUACAGCAAGUAUUUUAACAAUCGUUU ...(((...(((.((...)).))).))).........(------(((.--(((((((((((..(((...........)))..))))))))).))))))............... ( -17.40) >DroSim_CAF1 10766 108 - 1 ACUUCUUAUGAAUGCCACGCUUUCUAGACCUAUGUACUAC---UACUA--UGUGUGGGCCAUUAUACUUAACAUUAUUGUCUUGGCCCACAGCAAGUAUUUUAACAAUCAUUU ...(((...(((.((...)).))).)))....(((.....---((((.--(((((((((((..(((...........)))..))))))))).)))))).....)))....... ( -23.20) >DroEre_CAF1 10566 100 - 1 ACUUCUUAUGAUUACCACGCUUUCUAGACCUAUGUACUAC---GUGUAUGUGUGUGGGCCAAUUA----------ACUGCCUUGGCCCACAGCAAGUAUUUUAACAACCAUUU ..................((..........(((((((...---..)))))))((((((((((...----------......)))))))))))).................... ( -22.90) >DroYak_CAF1 10719 103 - 1 ACUUCUUAUGAUUACCACGCUUUCUAGACCUAUGUACUACGUCGUGUAUGUGUUUGGGCCUUUAU----------AUUGUCUUGGCCCAAAGAAAGUAUUUUAACAACCAUUU ..................(((((((.....(((((((........))))))).(((((((.....----------........))))))))))))))................ ( -22.92) >consensus ACUUCUUAUGAAUACCACGCUUUCUAGACCUAUGUACUAC___GACUA__UGUGUGGGCCAUUAU__________AUUGUCUUGGCCCACAGCAAGUAUUUUAACAACCAUUU ..................((((.((.....(((((((........))))))).((((((((.....................)))))))))).))))................ (-14.48 = -15.47 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:24 2006