Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,965,314 – 12,965,434 |
Length | 120 |
Max. P | 0.571238 |
Location | 12,965,314 – 12,965,434 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.00 |
Mean single sequence MFE | -36.42 |
Consensus MFE | -29.68 |
Energy contribution | -29.80 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.41 |
Structure conservation index | 0.82 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.571238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12965314 120 + 27905053 GACUUGGUGCACGCCAAAAAGAUUCCGAUUGUGAAAAUGGGCAAGAACGAGCUGGACAACAGUCAGUUUGGAAAGGUUUUCGGCACAUGCCGGAUACCGAGAAGGUUUACCGACGAUAUC ...((((((...(((.......((((..((((........))))((((..((((.....))))..)))))))).(((.((((((....)))))).))).....))).))))))....... ( -35.20) >DroSec_CAF1 5343 120 + 1 GACUUGGUGCACGCCAAGAAGAUUCCGAUUGUGAAAAUGGGCAAGAACGAGUUGGACAACAGUCAGUUUGGCAAAGUUUUCGGCACAUGCCGGAUACCGAGAAGGGGUACCGACGAUAUC ..(((((((...((((((..((((((((((((..............)).))))))).....)))..))))))......((((((....)))))))))))))..((....))......... ( -34.74) >DroSim_CAF1 5547 120 + 1 GACUUGGUGCAGGCCAAGAAGAUUCCGAUUGUGAAAAUGGGCAAGAACGAGUUGGACAACAGUCAGUUUGGCAAAGUUUUCGGCACAUGCCGGAUACCGAGAAGGGGUACCGACGAUAUC ..(((((((...((((((..((((((((((((..............)).))))))).....)))..))))))......((((((....)))))))))))))..((....))......... ( -34.44) >DroEre_CAF1 5321 120 + 1 GAUUUGGUGCACGCCAAAAAGAUUCCGAUUGUGAAAAUGGGCAAGAACGAGUUGGACAACAGUCAGUUUGGCAAGGUGUUCGGCACUUGCCGGAUACCGAAAAGGUUCACGGACGACAUC ..((((((....)))))).....((((.((((........))))((((..((..(((........)))..))..((((((((((....))))))))))......)))).))))....... ( -41.10) >DroYak_CAF1 5483 120 + 1 GACUUGGUGCACGCCAAGAAGAUUCCGAUUGUGAAAAUGGGCAAGAACGAGUUGGACAACAGUCAGUUUGGCAAAGUGUUCGGCACAUGCCGGAUACCGAAAAGGUUUACGGACGACAUC ..((((((....)))))).....((((.((((........))))((((..((..(((........)))..))...(((((((((....))))))))).......)))).))))....... ( -36.60) >consensus GACUUGGUGCACGCCAAGAAGAUUCCGAUUGUGAAAAUGGGCAAGAACGAGUUGGACAACAGUCAGUUUGGCAAAGUUUUCGGCACAUGCCGGAUACCGAGAAGGUUUACCGACGAUAUC ..(((((((...((((((..((((((((((((..............)).))))))).....)))..))))))......((((((....)))))))))))))................... (-29.68 = -29.80 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:17 2006