Locus 4930

Sequence ID 3R_DroMel_CAF1
Location 12,965,114 – 12,965,234
Length 120
Max. P 0.601584
window8066

overview

Window 6

Location 12,965,114 – 12,965,234
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.17
Mean single sequence MFE -40.14
Consensus MFE -36.74
Energy contribution -37.18
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -1.13
Structure conservation index 0.92
SVM decision value 0.14
SVM RNA-class probability 0.601584
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12965114 120 - 27905053
AGGUCAUGCCGGGACUGGAGAAGCAAGUCACUGGCGACCGAAACUGUAAGUAGGCAACCUUCAGCCAGCGAUGGGCUAACCAGUUCUUCUCCUGUUCACCAGUUUCUUCGAGGAGCUUUU
.((((..(((((((((.........)))).)))))))))(((((((...((.(((........))).))((.(((((....))))).))..........))))))).............. ( -36.80)
>DroSec_CAF1 5143 120 - 1
AGGUCAUGCCGGGACUGGAGAAGCAAGUCACUGGCGACCGAAACUGCAAGUAGGCAACCUUCAGCCAGCGAUGGGCUAACCAGUUCCUCUCCUGAUCACCAGCUUCCUCCAGGAGCUUUU
.(((((.(..((((((((...(((..(((.(((((....(((..(((......)))...))).))))).)))..)))..))))))))...).)))))...((((((.....))))))... ( -43.90)
>DroSim_CAF1 5347 120 - 1
AGGUCAUGCCGGGACUGGAGAAGCAAGUGACUGGCGACCGAAACUGCAAGUAGGCAACCUUCAGCCAGCGAUGGGCUAACCAGUUCCUCUCCUGAUUACCAGCUUCCUCCAGGAGCUUUU
.((.....))((((((((...(((..((..(((((....(((..(((......)))...))).)))))..))..)))..)))))))).((((((...............))))))..... ( -38.66)
>DroEre_CAF1 5121 120 - 1
AGGUCAUGCCGGGACUGGAGAAGCAAGUCACUGGCGAGCGAAACUGCAAGUAGGCCACCUUCAGCCAGCGAUGGGCUAACCAGUUCUUCUCCUGACCACCAACUUCCUCCAGCAGAUUUU
.(((((.(..((((((((...(((..(((.(((((..(((....)))..(.(((...))).).))))).)))..)))..))))))))...).)))))....................... ( -39.40)
>DroYak_CAF1 5283 120 - 1
AGGUCAUGCCGGGACUGGAGAAGCAGGUCACUGGCGAUCGGAACUGCAAGUAGGCUACCUUCAGCCAGCGAUGGGCUAACCAGUUCUUCUCCUGACCACCCACUUCCUCCAGGAGAUUUU
.((.....))((((((((...(((..(((.(((((....((..(((....)))....))....))))).)))..)))..))))))))(((((((...............))))))).... ( -41.96)
>consensus
AGGUCAUGCCGGGACUGGAGAAGCAAGUCACUGGCGACCGAAACUGCAAGUAGGCAACCUUCAGCCAGCGAUGGGCUAACCAGUUCUUCUCCUGAUCACCAGCUUCCUCCAGGAGCUUUU
.((.....))((((((((...(((..(((.(((((....(((..(((......)))...))).))))).)))..)))..)))))))).((((((...............))))))..... (-36.74 = -37.18 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:16 2006