Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,866,717 – 1,866,823 |
Length | 106 |
Max. P | 0.667882 |
Location | 1,866,717 – 1,866,823 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 79.75 |
Mean single sequence MFE | -27.47 |
Consensus MFE | -16.26 |
Energy contribution | -18.32 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.67 |
Structure conservation index | 0.59 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1866717 106 + 27905053 ACACUAGUCAAUACAGACUGGUUACCUAAGUGGGUUAAGUUUUAUUUAACCGUUAACUGGGCUAAUGCAAGAGCACACAGCCCGCUGGAAGCGCCCUCAAUGAUAU ..(((((((......)))))))..((..(((.((((((((...)))))))).......(((((..(((....)))...)))))))))).................. ( -27.70) >DroSec_CAF1 24845 106 + 1 ACACUAGUCAAUACAGACUGGUUACCUAAGUGGGUUAAGUUUUAUUUAACCGUUAACUGGGCUAAUGCAAGAGCACACAGCCCGCGGGGAACGCCCACGGUGAAAU ...((((((......))))))(((((...((((((...(((((......((((.....(((((..(((....)))...)))))))))))))))))))))))))... ( -35.30) >DroSim_CAF1 25370 106 + 1 ACACUAGUCAAUACAGACUGGUUACCUAAGUGGGUUAAGUUUUAUUUAACCGUUAACUGGGCUAAUGCAAGAGCACACAGCCCGCUGGGAACGCCCUCGGUGAUAU ...((((((......))))))(((((..(((.((((((((...)))))))).......(((((..(((....)))...))))))))(((....)))..)))))... ( -34.10) >DroEre_CAF1 25184 106 + 1 ACACUAGUCAAUACAGACAUGUUCCCUAAGUGGGCUAAGUUUUAUUUAACCGUUAACUGGGCUAAUGCAAGAGCACACAGCCCGCUGGAAACGCCCUGGGCAACAU ......(((......)))((((((((.....((((.......................(((((..(((....)))...)))))...(....))))).))).))))) ( -31.20) >DroYak_CAF1 24652 85 + 1 ACACUAGUCAAUACAGACAGGCUACCUAAACGAGUUAAGUUUUAUUUAACCGUUAACUGGGCUAAUGCAAUAGCACUCAGGC---------------------GAU ...((.(((......)))))((......((((.(((((((...)))))))))))..(((((....(((....))))))))))---------------------... ( -18.10) >DroAna_CAF1 16560 93 + 1 ACACGAGUCAAUAUGGACUAGUUGCCAAACUGGGUUAAGUUUUAUUUAACUGUCAAGCGGGCUAAUGCAAGAGCACACAAGCCU-AGGAAAUGC------------ ..((.((((......)))).)).......(((((((.((((......)))).....((..((....))....)).....)))))-)).......------------ ( -18.40) >consensus ACACUAGUCAAUACAGACUGGUUACCUAAGUGGGUUAAGUUUUAUUUAACCGUUAACUGGGCUAAUGCAAGAGCACACAGCCCGCUGGAAACGCCCUCGGUGAUAU ..(((((((......)))))))..((......((((((((...)))))))).......(((((..(((....)))...)))))...)).................. (-16.26 = -18.32 + 2.06)
Location | 1,866,717 – 1,866,823 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 79.75 |
Mean single sequence MFE | -27.95 |
Consensus MFE | -18.29 |
Energy contribution | -18.77 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.18 |
Mean z-score | -1.50 |
Structure conservation index | 0.65 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667882 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1866717 106 - 27905053 AUAUCAUUGAGGGCGCUUCCAGCGGGCUGUGUGCUCUUGCAUUAGCCCAGUUAACGGUUAAAUAAAACUUAACCCACUUAGGUAACCAGUCUGUAUUGACUAGUGU .((((..(((((((((.....))((((((.((((....)))))))))).)))...((((((.......))))))..))))))))((.((((......)))).)).. ( -29.80) >DroSec_CAF1 24845 106 - 1 AUUUCACCGUGGGCGUUCCCCGCGGGCUGUGUGCUCUUGCAUUAGCCCAGUUAACGGUUAAAUAAAACUUAACCCACUUAGGUAACCAGUCUGUAUUGACUAGUGU .....((((((((.....)))))((((((.((((....)))))))))).......((((((.......))))))......))).((.((((......)))).)).. ( -34.80) >DroSim_CAF1 25370 106 - 1 AUAUCACCGAGGGCGUUCCCAGCGGGCUGUGUGCUCUUGCAUUAGCCCAGUUAACGGUUAAAUAAAACUUAACCCACUUAGGUAACCAGUCUGUAUUGACUAGUGU .....(((..(((....)))(((((((((.((((....)))))))))).)))...((((((.......))))))......))).((.((((......)))).)).. ( -30.80) >DroEre_CAF1 25184 106 - 1 AUGUUGCCCAGGGCGUUUCCAGCGGGCUGUGUGCUCUUGCAUUAGCCCAGUUAACGGUUAAAUAAAACUUAGCCCACUUAGGGAACAUGUCUGUAUUGACUAGUGU (((((.(((.(((((((...(((((((((.((((....)))))))))).))))))((((......))))..)))).....))))))))(((......)))...... ( -33.30) >DroYak_CAF1 24652 85 - 1 AUC---------------------GCCUGAGUGCUAUUGCAUUAGCCCAGUUAACGGUUAAAUAAAACUUAACUCGUUUAGGUAGCCUGUCUGUAUUGACUAGUGU ...---------------------((((((((((....))))).........(((((((((.......))))).))))))))).((..(((......)))..)).. ( -18.40) >DroAna_CAF1 16560 93 - 1 ------------GCAUUUCCU-AGGCUUGUGUGCUCUUGCAUUAGCCCGCUUGACAGUUAAAUAAAACUUAACCCAGUUUGGCAACUAGUCCAUAUUGACUCGUGU ------------.........-.((((...((((....)))).)))).(((.(((.(((((.......)))))...))).))).((.((((......)))).)).. ( -20.60) >consensus AUAUCACCGAGGGCGUUUCCAGCGGGCUGUGUGCUCUUGCAUUAGCCCAGUUAACGGUUAAAUAAAACUUAACCCACUUAGGUAACCAGUCUGUAUUGACUAGUGU .......................((((((.((((....)))))))))).......((((((.......))))))..........((.((((......)))).)).. (-18.29 = -18.77 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:32 2006