| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,952,199 – 12,952,313 |
| Length | 114 |
| Max. P | 0.970745 |
| Location | 12,952,199 – 12,952,313 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 73.45 |
| Mean single sequence MFE | -46.33 |
| Consensus MFE | -22.09 |
| Energy contribution | -21.93 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.970745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12952199 114 + 27905053 CCAUCCGGUGAAAACCAGCUCCGAAGCUCCUCUUGGAAAAGGGGAUGUGGGUAGUUCAACCGCCUGAGUUAGUGCGUUAAAGGUAAUGCUCUCGUUCAGGUGGAGCAGGCCAAU ....(((((....))).(((((...(((((((((....))))))).)).(((......)))(((((((..((.((((((....)))))).))..)))))))))))).))..... ( -46.90) >DroVir_CAF1 49500 114 + 1 CCAGCCGGUGAAGAGCAGCUCCGCGGUGCCCACAGGCCAGGCUAAAUGCGGCAACGCCACGGGCUGCGUGAGUGCAUCAUAGCGAAUGCUCUCGUUCAGCUGGAGCAGUGCAAU (((((.((...((((((((((((((..((((...(((...(((......)))...)))..)))))))).))))((......))...))))))...)).)))))........... ( -44.50) >DroPse_CAF1 47535 114 + 1 CCAGCCGGUGAAGAGGAGCUGCGCUGUGCCCUGGGGAAAGGCUGCAGUGGGCAGGGCCACAGGCUGGGUCAGAGCAUCGUAGACAAUGCUCUCGUUCAGCCGCAGCAGAGCAAU ....((........)).((((((((.(((((((.((.....)).))..))))).)))....(((((..(.(((((((.(....).))))))).)..))))))))))........ ( -50.80) >DroYak_CAF1 40477 114 + 1 CCAUCCGGUGAAAACCAGAUCCGCAGCUCCUCUGGGAAAGGAAGAAGUGGGUAGCCCAACCGCCUGAGUGAGGGCGUUAAAGCUGAUGCUCUCGUUCAGGUGAAGCAGGCCAAU ......(((....)))..((((((..(((((.......))).))..)))))).(((....(((((((((((((((((((....))))))))))))))))))).....))).... ( -46.30) >DroAna_CAF1 42644 114 + 1 CCAUCCGGUAAAAAGCAGCUCCGAAGAUCCUUGGGGAAACGGAGAGGUGGGAAGUUCCACCGCCUGGGUUCGAGCAUCAAACACAAUGCUCUGAUUCAGUUGCAACAAUCCGAU .....(((......(((((((((....(((....)))..))))).((((((....))))))..(((((((.((((((........)))))).)))))))))))......))).. ( -39.50) >DroPer_CAF1 50246 114 + 1 CCAGCCGGUGAAGAGGAGCUCCGCUGUGCCCUGGGGAAAGGCUGCAGUGGGCAGAGCCACAGGCUGGGUCAGAGCAUCGUAGACAAUGCUCUCGUUCAGCCGCAGCAGAGCAAU ((((..((((.((.((....)).)).))))))))......(((((.((((......)))).(((((..(.(((((((.(....).))))))).)..))))))))))........ ( -50.00) >consensus CCAGCCGGUGAAAAGCAGCUCCGCAGUGCCCUGGGGAAAGGCUGAAGUGGGCAGCGCCACCGCCUGGGUCAGAGCAUCAAAGACAAUGCUCUCGUUCAGCUGCAGCAGACCAAU .................(((.((((..((((.................))))..)))....(((((((..(((((((........)))))))..)))))))).)))........ (-22.09 = -21.93 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:14 2006