Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,950,907 – 12,950,997 |
Length | 90 |
Max. P | 0.591397 |
Location | 12,950,907 – 12,950,997 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 81.10 |
Mean single sequence MFE | -15.91 |
Consensus MFE | -10.23 |
Energy contribution | -10.04 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.25 |
Mean z-score | -1.59 |
Structure conservation index | 0.64 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12950907 90 - 27905053 GAAAUUUCGCAACUUGUGCAAAGUCGAGGAAAAAAUU-AUGUUAAAUCCAGUGAAAAUGCCAAAGUAUGUGAAAUAAUUUUCCCAAUUAAG ...((((((((((((..(((...(((.(((.......-........)))..)))...)))..)))).))))))))................ ( -15.76) >DroPse_CAF1 46453 90 - 1 GAAAUUUCGCAAUUUCUACCAAGUCAAUGGA-AAAUUGGUCGAAAAACAAGUGAAAAUGUUAAAGUAUGUGAAAGAAUGUCUCCAAUAAAG ((..(((((((.((((.(((((.((....))-...))))).))))((((........))))......))))))).....)).......... ( -15.80) >DroEre_CAF1 40922 89 - 1 GAAAUUUCGCAACUUGUGCAGAGUCGAGGGA-AAAUU-AUGUUAAAUCCAGUGAAAAUGCCAAAGUAUGUAAAAUAAUGUUCCCAAUAAAG ...((((..((((((..(((...(((..(((-.....-........)))..)))...)))..)))).))..))))................ ( -14.82) >DroYak_CAF1 39212 89 - 1 GAAAUUUCGCAACUUGUGCAGAGUCAAGGGA-AAAUU-AUGUUAAGUCCAGUGAAAAUGCCAAAGUAUGUGAAAUAAGGUUUCCAAUUAAG ...((((((((((((..(((...(((..(((-...((-(...))).)))..)))...)))..)))).))))))))................ ( -20.90) >DroAna_CAF1 41483 82 - 1 GAAAUUUCGCAACUAGUGCACAAUCAAAGGG-GAA--------AAAAUAAGUGAAAAUGCCUAAGUAUGUGAAAUAAUGUCUCCAAUAAAG ...(((((((((((((.(((...(((...(.-...--------....)...)))...))))).))).))))))))................ ( -13.00) >DroPer_CAF1 49165 90 - 1 GAAAUUUCGCAAUUUCUACCAAGUCAAUGGA-AAAUUGGUGAAAAAACAAGUGAAAAUGUUAAAGUAUGUGAAAGAAUGUCUCCAAUAAAG ((..(((((((.((((.(((((.((....))-...))))))))).((((........))))......))))))).....)).......... ( -15.20) >consensus GAAAUUUCGCAACUUGUGCAAAGUCAAGGGA_AAAUU_AUGUUAAAACAAGUGAAAAUGCCAAAGUAUGUGAAAUAAUGUCUCCAAUAAAG ...((((((((((((..(((...(((.((..................))..)))...)))..)))).))))))))................ (-10.23 = -10.04 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:13 2006