Locus 4921

Sequence ID 3R_DroMel_CAF1
Location 12,912,325 – 12,912,445
Length 120
Max. P 0.521872
window8056

overview

Window 6

Location 12,912,325 – 12,912,445
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.22
Mean single sequence MFE -44.28
Consensus MFE -38.06
Energy contribution -37.03
Covariance contribution -1.02
Combinations/Pair 1.37
Mean z-score -1.45
Structure conservation index 0.86
SVM decision value -0.02
SVM RNA-class probability 0.521872
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12912325 120 + 27905053
CGCCUAUCUGAUUGACCUGAUCGACCGCUUCAAGAAGUGGAAGGUCUCCAAGGGCGACGAAAGUGAGACGGAGUCUGAGAACUCUGACUCGGACUCGGACGCCAAGCAGGGCGGCAGCAG
(((((..((....(((((......((((((....)))))).)))))....))((((((....))....(.(((((((((........))))))))).).)))).....)))))....... ( -48.00)
>DroPse_CAF1 5126 120 + 1
CGCCUACCUGAUCGAUCUGAUCGAUCGCUUCAAGAAGUGGAAGGUCUCUAAGGGCGACGAGAGCGAGACGGAGUCCGAGAACUCCGACUCGGACUCGGAUGCCAAGCAGGGCGGCAGCAG
.(((..((((........((((..((((((....))))))..))))......((((.((((..((((.((((((......)))))).))))..))))..))))...))))..)))..... ( -49.10)
>DroEre_CAF1 807 120 + 1
CGCCUACCUGAUUGACCUAAUCGACCGCUUCAAGAAGUGGAAGCUCUCCAAGGGCGAUGAAAGUGAGACGGAGUCGGAGAACUCAGACUCGGAUUCGGACGCCAAGCAGGGCGGCAGCAG
.(((..((((.(((.....(((..((((((....))))))..((((.....))))))).....((((.(.(((((.((....)).))))).).)))).....))).))))..)))..... ( -40.20)
>DroYak_CAF1 807 120 + 1
CGCCUACCUAAUUGACCUGAUCGACCGAUUCAAGAAGUGGAAGCUCUCCAAGGGCGACGAAAGUGAGACAGAGUCGGAGAACUCAGACUCGGACUCGGAUGCCAAGCAGGGCGGCAGCAG
.(((..((...((((....(((....))))))).....))..(((((.(...((((((....))......(((((.(((........))).)))))...))))..).))))))))..... ( -36.60)
>DroAna_CAF1 808 120 + 1
UGCCUACUUGAUCGAUCUGAUCGAUCGCUUCAAGAAGUGGAAGCUGUCCAAGGGUGACGAGAGCGAGACUGAGUCGGAGAACUCGGACUCGGAUUCCGAUGCCAAGCAAGGUGGUAGCAG
((((((((((((((((...)))))))((((...(...((((((((.((....(....))).)))....(((((((.((....)).))))))).)))))...).)))).))))))..))). ( -42.70)
>DroPer_CAF1 807 120 + 1
CGCCUACCUGAUCGAUCUGAUCGAUCGCUUCAAGAAGUGGAAGGUCUCUAAGGGCGACGAGAGCGAGACGGAGUCCGAGAACUCCGACUCGGACUCGGAUGCCAAGCAGGGCGGCAGCAG
.(((..((((........((((..((((((....))))))..))))......((((.((((..((((.((((((......)))))).))))..))))..))))...))))..)))..... ( -49.10)
>consensus
CGCCUACCUGAUCGACCUGAUCGACCGCUUCAAGAAGUGGAAGCUCUCCAAGGGCGACGAAAGCGAGACGGAGUCGGAGAACUCAGACUCGGACUCGGAUGCCAAGCAGGGCGGCAGCAG
.(((..((((.((((.....))))((((((....))))))............((((.((((..((((.((((((......)))))).))))..))))..))))...))))..)))..... (-38.06 = -37.03 +  -1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:06 2006