Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,911,196 – 12,911,353 |
Length | 157 |
Max. P | 0.772462 |
Location | 12,911,196 – 12,911,313 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.22 |
Mean single sequence MFE | -32.53 |
Consensus MFE | -23.16 |
Energy contribution | -23.17 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.11 |
Mean z-score | -2.56 |
Structure conservation index | 0.71 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584866 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12911196 117 + 27905053 UGGCGGCUCUAAUCAACAGCUGGAAAGAUAUCGAUAUCGACAGGA-GAAUAUCGAUAUUCAAUCGGUAUUCGAUACUGCUGCGAUACAGCAAAA--AAAAGAGAGAUUUCUCGGAUUAGA .......(((((((....((((((......))..(((((.(((..-((((((((((.....))))))))))....)))...)))))))))....--....(((......))).))))))) ( -34.40) >DroEre_CAF1 28693 120 + 1 UGGCGGCUCCAAUAAACAGCUGGAAAGUUAUCGAUAUCCUCAGGGCAUAUAUUAAUAUCGAAUCGGUAUUCGAUAGUGCUGCAAUACAGCAAAAAAAAAAGAGAGAUUUCUCGGAUUAGA .......(((.......((((....))))...((.((((((..............((((((((....)))))))).(((((.....))))).........))).))).))..)))..... ( -25.80) >DroYak_CAF1 29527 118 + 1 UGGCGGCUCCAAUAAACAGCUGGAAAGAUAUCGAUAUCGGCAGGGCGAAUAUCGAUAUCGAAUCGGUAUUCGAUACUGCUGCGAUACAGCAAAA--AAAAGAGAGAUUUCUCGGAUUAGA .......(((........((((......(((((....((((((..(((((((((((.....)))))))))))...)))))))))))))))....--....(((......))))))..... ( -37.40) >consensus UGGCGGCUCCAAUAAACAGCUGGAAAGAUAUCGAUAUCGACAGGGCGAAUAUCGAUAUCGAAUCGGUAUUCGAUACUGCUGCGAUACAGCAAAA__AAAAGAGAGAUUUCUCGGAUUAGA .......(((........(((((...(((((((((((...........)))))))))))...))))).........(((((.....))))).........(((......))))))..... (-23.16 = -23.17 + 0.01)
Location | 12,911,196 – 12,911,313 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.22 |
Mean single sequence MFE | -29.23 |
Consensus MFE | -23.77 |
Energy contribution | -24.67 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.07 |
Mean z-score | -2.40 |
Structure conservation index | 0.81 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.772462 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12911196 117 - 27905053 UCUAAUCCGAGAAAUCUCUCUUUU--UUUUGCUGUAUCGCAGCAGUAUCGAAUACCGAUUGAAUAUCGAUAUUC-UCCUGUCGAUAUCGAUAUCUUUCCAGCUGUUGAUUAGAGCCGCCA ........((((....))))....--....(((.((...(((((((...(((.....(((((.((((((((...-...)))))))))))))....)))..)))))))..)).)))..... ( -30.20) >DroEre_CAF1 28693 120 - 1 UCUAAUCCGAGAAAUCUCUCUUUUUUUUUUGCUGUAUUGCAGCACUAUCGAAUACCGAUUCGAUAUUAAUAUAUGCCCUGAGGAUAUCGAUAACUUUCCAGCUGUUUAUUGGAGCCGCCA .....(((((((.(((.(((.........(((((.....))))).((((((((....))))))))..............)))))).))((......))..........)))))....... ( -24.20) >DroYak_CAF1 29527 118 - 1 UCUAAUCCGAGAAAUCUCUCUUUU--UUUUGCUGUAUCGCAGCAGUAUCGAAUACCGAUUCGAUAUCGAUAUUCGCCCUGCCGAUAUCGAUAUCUUUCCAGCUGUUUAUUGGAGCCGCCA ........((((....))))....--....(((.((..(((((.(.((((.....)))).)((((((((((((.((...)).))))))))))))......)))))....)).)))..... ( -33.30) >consensus UCUAAUCCGAGAAAUCUCUCUUUU__UUUUGCUGUAUCGCAGCAGUAUCGAAUACCGAUUCGAUAUCGAUAUUCGCCCUGACGAUAUCGAUAUCUUUCCAGCUGUUUAUUGGAGCCGCCA ........((((....))))..........(((.((..(((((...((((.....))))..((((((((((((.........))))))))))))......)))))....)).)))..... (-23.77 = -24.67 + 0.89)
Location | 12,911,236 – 12,911,353 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.30 |
Mean single sequence MFE | -28.64 |
Consensus MFE | -25.09 |
Energy contribution | -25.10 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.10 |
Mean z-score | -1.80 |
Structure conservation index | 0.88 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12911236 117 - 27905053 GCGGGGGCACUUGACUAAUAAUUUUUUCGUUGGUAUCUCAUCUAAUCCGAGAAAUCUCUCUUUU--UUUUGCUGUAUCGCAGCAGUAUCGAAUACCGAUUGAAUAUCGAUAUUC-UCCUG .((((((...((((...........(((((((((((.((.........((((....))))....--..((((((.....))))))....))))))))).))))..))))....)-))))) ( -26.12) >DroEre_CAF1 28733 120 - 1 GCGGGGGCACUUGACUAAUAAUUUUUUCGUUGGUAUCUCAUCUAAUCCGAGAAAUCUCUCUUUUUUUUUUGCUGUAUUGCAGCACUAUCGAAUACCGAUUCGAUAUUAAUAUAUGCCCUG ...((((((.............(((((((((((........))))..)))))))...............(((((.....))))).((((((((....))))))))........)))))). ( -28.80) >DroYak_CAF1 29567 118 - 1 GCGGGGGCACUUGACUAAUAAUUUUUUCGUUGGUAUCUCAUCUAAUCCGAGAAAUCUCUCUUUU--UUUUGCUGUAUCGCAGCAGUAUCGAAUACCGAUUCGAUAUCGAUAUUCGCCCUG ...(((((.....(((((..(.....)..))))).....(((......((((....))))....--...(((((.....)))))(((((((((....))))))))).)))....))))). ( -31.00) >consensus GCGGGGGCACUUGACUAAUAAUUUUUUCGUUGGUAUCUCAUCUAAUCCGAGAAAUCUCUCUUUU__UUUUGCUGUAUCGCAGCAGUAUCGAAUACCGAUUCGAUAUCGAUAUUCGCCCUG ...(((((....((..((....))..))(((((((((..(((......((((....)))).........(((((.....)))))............)))..)))))))))....))))). (-25.09 = -25.10 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:05 2006