Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,910,291 – 12,910,390 |
Length | 99 |
Max. P | 0.976557 |
Location | 12,910,291 – 12,910,390 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.25 |
Mean single sequence MFE | -38.97 |
Consensus MFE | -24.73 |
Energy contribution | -24.73 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.07 |
Mean z-score | -2.40 |
Structure conservation index | 0.63 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12910291 99 + 27905053 -----------------CACCGUUCUGUCACAGAUUCCUUGCUGGUUGUCUCCUCGCGAACUCCCGGGUCGCAGACAACCACCGACGAAUCUGACGAUCUGU----ACCCAGGCAAAAGU -----------------........((((.(((((((.(((.(((((((((....((((.((....))))))))))))))).))).)))))))((.....))----.....))))..... ( -33.20) >DroEre_CAF1 27480 119 + 1 ACCAGAUCGCCGUCGGCCAGCAAUCUGGCAAAGAUUUCUUGCUGGUUGGCUCCUAGCAAACUCCCGGGUCGGAGUCAACCACCGACGAAUCUGAUGAUCUGUACGUACCCAGGCAA-AGU ..(((((((.(....(((((....)))))..((((((.(((.(((((((((((......(((....))).))))))))))).))).))))))).)))))))...............-... ( -41.50) >DroYak_CAF1 28526 114 + 1 ACCAG-UCGCCGGCGUACACCAAGCUGGCACAGAUUCCUUGCUGGUUGGCUCAUCACGAACUCCCGGGUCGCAGUCAACCACCGACGAAUCUGAUGAUCUGU----ACCCAGGCAA-AGU ....(-((((((((.........)))))).(((((((.(((.(((((((((((((.((......))))).).))))))))).))).))))))).........----.....)))..-... ( -42.20) >consensus ACCAG_UCGCCG_CG__CACCAAUCUGGCACAGAUUCCUUGCUGGUUGGCUCCUCGCGAACUCCCGGGUCGCAGUCAACCACCGACGAAUCUGAUGAUCUGU____ACCCAGGCAA_AGU ..............................(((((((.(((.(((((((((.....(((.((....))))).))))))))).))).)))))))..(.((((........)))))...... (-24.73 = -24.73 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:02 2006