Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,907,278 – 12,907,392 |
Length | 114 |
Max. P | 0.510664 |
Location | 12,907,278 – 12,907,392 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 78.40 |
Mean single sequence MFE | -19.13 |
Consensus MFE | -10.70 |
Energy contribution | -11.03 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.01 |
Structure conservation index | 0.56 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.510664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12907278 114 + 27905053 UAAAUAAAUGCACCUGGGUGCAACUAGUUUUGAUACCCUCACAACAAGUAUUGAGGUAUACUGAUCACAAAGGUAUAUUGAAACAAAAAAAAUUUAAAGAUACAUAUUUAUAUG ((((((..(((((....)))))....((((..(((.(((((..........)))))..((((.........)))))))..))))....................)))))).... ( -21.10) >DroEre_CAF1 24471 103 + 1 UAAAUAAAUGCACCUGGGUGCAACUAGUUUCGAUACCCUUACAAAAAGC--UGAGGUAUACUGAUUAGAAAAUUAA--G-------AACAAAGGUAAAAUUACAAAUUUAUAUA ...((((((((((....))))..((((((...(((((.(((........--))))))))...))))))........--.-------...................))))))... ( -18.20) >DroYak_CAF1 25525 107 + 1 UAAAUAAAUGCACCUGGGUGCAACUAGUUUUGAUACCCUUACAAAAAGC-----GGUAUACUGAUCAGUAAAUUAA--CAAAAGUAAACAAAAGUAAAAUUACAAAAUGAUAUA ........(((((....)))))..((.(((((.(((((((.....))).-----))))((((....))))......--))))).)).......(((....)))........... ( -18.10) >consensus UAAAUAAAUGCACCUGGGUGCAACUAGUUUUGAUACCCUUACAAAAAGC__UGAGGUAUACUGAUCAGAAAAUUAA__C_AAA__AAACAAAAGUAAAAUUACAAAUUUAUAUA ........(((((....))))).((.(((...(((((.................)))))...))).)).............................................. (-10.70 = -11.03 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:59 2006