Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,906,661 – 12,906,777 |
Length | 116 |
Max. P | 0.796665 |
Location | 12,906,661 – 12,906,777 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.14 |
Mean single sequence MFE | -30.30 |
Consensus MFE | -16.45 |
Energy contribution | -16.23 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.11 |
Structure conservation index | 0.54 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796665 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12906661 116 - 27905053 AUGUGCAGCGACAAACUGUCUGUGAGUGGGCAAGAAAAGGCGGCAUACAGUGCGCGCCAAAAUAUUGCAUACAGUACAAAAGCAAUAAAUAUUUGACUA----GAGAAAUCUGAAUCAAA .(((((.(((((.....))).))..(((.((((.....((((((((...)))).))))......)))).))).))))).............(((((.((----((....))))..))))) ( -30.40) >DroEre_CAF1 23886 113 - 1 AUGUGCAGCGUCAAACUGUCUGUGUGUGUGUAAGGGAAGGCGGC-UACAGAGCGCGCCAAAAUAUUGCAUACAGCACAAAGGCACUUACAAGUCGCCAA----GAG--AACUAAAUCAAA .(((((........((.....)).(((((((((.....((((((-(....))).))))......))))))))))))))..((((((....))).)))..----...--............ ( -32.80) >DroYak_CAF1 24940 101 - 1 AUGGGCAGCGACAAGCUGUCUGUGUGUGGGUAAGGAAAGGCGGCUUACAGUGCGCGCCAAAAUAUUGCAUAC-----------------CAUUCGCCAAGAAAGAG--AACUUAAUCAAA ..(((((((.....)))))))(((.((((((((.....((((((.......)).))))......))))...)-----------------))).)))..........--............ ( -27.70) >consensus AUGUGCAGCGACAAACUGUCUGUGUGUGGGUAAGGAAAGGCGGC_UACAGUGCGCGCCAAAAUAUUGCAUACAG_ACAAA_GCA_U_A_AAUUCGCCAA____GAG__AACUAAAUCAAA ....((((((......)).))))..(((.((((.....((((((.......)).))))......)))).)))................................................ (-16.45 = -16.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:54 2006