Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,895,936 – 12,896,026 |
Length | 90 |
Max. P | 0.723056 |
Location | 12,895,936 – 12,896,026 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 81.71 |
Mean single sequence MFE | -23.85 |
Consensus MFE | -19.52 |
Energy contribution | -18.81 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.24 |
Mean z-score | -1.53 |
Structure conservation index | 0.82 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.723056 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12895936 90 + 27905053 AUUGA------CGA-AGCACCAACUUCGUUUGCAUUUCCAACAGUAGCAAAUGCGAAUUCGAGGAACUGGUGCUCUAUUUGAAAUCCGUGCGCUAGA ....(------((.-.((((((.((((((((((((((.(.......).)))))))))..)))))...))))))((.....))....)))........ ( -23.00) >DroPse_CAF1 10656 96 + 1 AUUUUUGUUUAAAU-GUCGCCAGUUUCAGUUGCAUUUCUAGAUCUCAGAAAUGCAAAUAUGAGCAUUGGGUGUGGCAUUAAAAAUCCGUGCGCUAGG .......(((.(((-(((((((((((((.((((((((((.(....)))))))))))...)))).)))))...))))))).))).............. ( -25.20) >DroSec_CAF1 13591 90 + 1 AUUGA------CGA-AGCACCAACUUCGUUUGCAUUUCCAUCUGUAGCAAAUGCGAAUUCGAGGAACUGGUGCUCUAUUUUAAAUCCGUGCGCUAGA .....------.((-.((((((.((((((((((((((.(.......).)))))))))..)))))...))))))))...................... ( -22.60) >DroSim_CAF1 14551 90 + 1 AUUGA------CGA-AGCACCAACUUCGUUUGCAUUUCCAUCUGUAGCAAAUGCGAAUUCGAGGAACUGGUGCUCUAUUUUAAAUCCGUGCGCUAGA .....------.((-.((((((.((((((((((((((.(.......).)))))))))..)))))...))))))))...................... ( -22.60) >DroEre_CAF1 12706 91 + 1 AUUCG------CGAGAGCACCAACUUCGUUUGCAUUUCCACCUGUAGCAAAUGCGAACUCGAGGAACUGGUGCUCUACUUAAAAUCCGUGCGCUAGA ....(------(((((((((((.((((((((((((((.(.......).))))))))))..))))...)))))))))((.........)).))).... ( -29.50) >DroYak_CAF1 13930 91 + 1 AUUCA------UGAAUGCACCAACUUCGUUUGCAUUUCCACCUGUAGCAAAUGCGAAUUCGAGGAACUGGUGUUCUAUUUAAAAUCCGUGCGCUAGA .....------(((((((((((.((((((((((((((.(.......).)))))))))..)))))...))))))...)))))................ ( -20.20) >consensus AUUGA______CGA_AGCACCAACUUCGUUUGCAUUUCCACCUGUAGCAAAUGCGAAUUCGAGGAACUGGUGCUCUAUUUAAAAUCCGUGCGCUAGA .......................(((((.((((((((.(.......).))))))))...)))))..(((((((................))))))). (-19.52 = -18.81 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:54 2006