Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,893,086 – 12,893,183 |
Length | 97 |
Max. P | 0.527379 |
Location | 12,893,086 – 12,893,183 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 99.59 |
Mean single sequence MFE | -23.60 |
Consensus MFE | -23.00 |
Energy contribution | -23.20 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.24 |
Structure conservation index | 0.97 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527379 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12893086 97 + 27905053 UUGCCAUUGGCAAUUUGGCCACCAUGGCGUAUGCGCGAUAUUUGCACUCUGUUGUCUGACAAUGCUCUUUAUGCCAUUGUUGAUUGAUAAAUUCCCA ..(((((((((......))))..)))))......((((...))))......(((((.((((((((.......).)))))))....)))))....... ( -22.80) >DroSec_CAF1 10677 97 + 1 UUGCAAUUGGCAAUUUGGCCACCAUGGCGUAUGCGCGAUAUUUGCACUCUGUUGUCUGACAAUGCUCUUUAUGCCAUUGUUGAUUGAUAAAUUCCCA ...((((..((((..(((...)))(((((((.((((((...))))....((((....))))..))....)))))))))))..))))........... ( -23.80) >DroSim_CAF1 9683 97 + 1 UUGCAAUUGGCAAUUUGGCCACCAUGGCGUAUGCGCGAUAUUUGCACUCUGUUGUCUGACAAUGCUCUUUAUGCCAUUGUUGAUUGAUAAAUUCCCA ...((((..((((..(((...)))(((((((.((((((...))))....((((....))))..))....)))))))))))..))))........... ( -23.80) >DroEre_CAF1 9783 97 + 1 UUGCAAUUGGCAAUUUGGCCACCAUGGCGUAUGCGCGAUAUUUGCACUCUGUUGUCUGACAAUGCUCUUUAUGCCAUUGUUGAUUGAUAAAUUCCCA ...((((..((((..(((...)))(((((((.((((((...))))....((((....))))..))....)))))))))))..))))........... ( -23.80) >DroYak_CAF1 10966 97 + 1 UUGCAAUUGGCAAUUUGGCCACCAUGGCGUAUGCGCGAUAUUUGCACUCUGUUGUCUGACAAUGCUCUUUAUGCCAUUGUUGAUUGAUAAAUUCCCA ...((((..((((..(((...)))(((((((.((((((...))))....((((....))))..))....)))))))))))..))))........... ( -23.80) >consensus UUGCAAUUGGCAAUUUGGCCACCAUGGCGUAUGCGCGAUAUUUGCACUCUGUUGUCUGACAAUGCUCUUUAUGCCAUUGUUGAUUGAUAAAUUCCCA ...((((..((((..(((...)))(((((((.((((((...))))....((((....))))..))....)))))))))))..))))........... (-23.00 = -23.20 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:48 2006