Locus 4910

Sequence ID 3R_DroMel_CAF1
Location 12,892,822 – 12,892,916
Length 94
Max. P 0.982096
window8035

overview

Window 5

Location 12,892,822 – 12,892,916
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 95.32
Mean single sequence MFE -29.68
Consensus MFE -25.66
Energy contribution -27.02
Covariance contribution 1.36
Combinations/Pair 1.04
Mean z-score -2.43
Structure conservation index 0.86
SVM decision value 1.91
SVM RNA-class probability 0.982096
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12892822 94 - 27905053
AGGCGCUAAAGGCCAAGCCCAGGCGCGCGGCUAGUGGCGCCAAGUAAAAAUAUAUCGCAAUAAAUCCGUAGACGGCUUUUAAAAUUUUGCAUGG
.(((((((..((((..((....))....))))..)))))))...............((((((((.(((....)))..)))).....)))).... ( -30.00)
>DroSec_CAF1 10422 94 - 1
AGGCGCUAAAGGCCAAGCCCAGCUGGGCGGCUAGUGGCGCCAAGUAAAAAUAUAUCGCAAUAAAUCCGUAGACGGCUUUUAAAAUUUUGCAUGG
.(((((((..((((..((((....))))))))..)))))))...............((((((((.(((....)))..)))).....)))).... ( -34.60)
>DroSim_CAF1 9444 94 - 1
AGGCGCUAAAGGCCAAGCCCAGGCGGGCGGCUAGUGGCGCCAAGUAAAAAUAUAUCGCAAUUAAUCCGUAGACGGCUUUUAAAAUUUUGCAUGG
.(((((((..((((..((((....))))))))..)))))))...............((((((((.(((....)))...))))....)))).... ( -34.10)
>DroEre_CAF1 9526 94 - 1
AGGCGCUAAAGGCCAAGCCCAGGCGGGCGUCUUGUGGCGCCAAGUAAAAAUAUAUCGCAAUAAAUCCGUAGACGGCUUUUAAAAUUUUGCAUGG
.((((((((((((...((((....))))))))).)))))))...............((((((((.(((....)))..)))).....)))).... ( -30.70)
>DroYak_CAF1 10709 94 - 1
AGGCGCUAAAGGCCAAGCCCAGGCGGACGGCUAGUGGCGCCAAGUAAAAAUAUAUCGCAAUAAAUCCGUAGACGGCUUUUAAAAUUUUGCAUGG
.(((((((..((((..((....))....))))..)))))))...............((((((((.(((....)))..)))).....)))).... ( -30.00)
>DroAna_CAF1 8371 94 - 1
AGGCGAAAAAGGCCAAGCCCAGACGGACGAACAGUGGCGCCAAGUAAAAAUAUAUCGCAAUAAAUCCGUAGACGGCUUUUAAAAUUUUGCAUGG
..((((((......(((((...(((((.........(((....(((....)))..)))......)))))....)))))......)))))).... ( -18.66)
>consensus
AGGCGCUAAAGGCCAAGCCCAGGCGGGCGGCUAGUGGCGCCAAGUAAAAAUAUAUCGCAAUAAAUCCGUAGACGGCUUUUAAAAUUUUGCAUGG
.(((((((..((((..((((....))))))))..)))))))...............((((((((.(((....)))..)))).....)))).... (-25.66 = -27.02 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:47 2006