Locus 491

Sequence ID 3R_DroMel_CAF1
Location 1,854,521 – 1,854,617
Length 96
Max. P 0.626148
window793

overview

Window 3

Location 1,854,521 – 1,854,617
Length 96
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 80.95
Mean single sequence MFE -25.81
Consensus MFE -12.48
Energy contribution -13.72
Covariance contribution 1.24
Combinations/Pair 1.09
Mean z-score -2.13
Structure conservation index 0.48
SVM decision value 0.19
SVM RNA-class probability 0.626148
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1854521 96 - 27905053
AGAUUAAUCAUUCGGAACACCCUUUUGCGGCGGUCAAAGCCGGCUAAA--------CGGCUUACCCUAAACUUUAAAGAUGUUUCGGAAUUAAUCCUCUAACGG
.(((((((..(((((((((..((((...((.(((..((((((......--------))))))))))).......)))).))))))))))))))))......... ( -26.70)
>DroSec_CAF1 12568 96 - 1
AGAUUAAUCAUUCGGGACACCCUUUUGCAGCGGUCAAAGCCGGCUAAC--------CGGCUUACCUUAAACGUUAAAGAUGUUUCGAAAUUAAUCCUCUAACGA
.(((((((..((((..(((..((((.((...(((..(((((((....)--------)))))))))......)).)))).)))..)))))))))))......... ( -29.30)
>DroSim_CAF1 13021 96 - 1
AGAUUAAUCAUUCGGGACACCCUUUUGCGGCGGUCAAAGCCGGCUAAC--------CGGCUUACCUUAAACGUUAAAGAUGUUUCGAAAUUAAUCCUCUAACGA
.(((((((..((((..(((..((((.(((..(((..(((((((....)--------))))))))).....))).)))).)))..)))))))))))......... ( -33.00)
>DroEre_CAF1 12322 104 - 1
AGAUUAAUCACUCGGCAAACCCUUUUGCGGCGCUCGAAGCCGGCUUGCCGUAUUGCCGUCUUGCCUUAAAUAUUCAAGGUGUUUCGGAAUUAAACCUCUAACGA
...(((((..(.((((((.......((((((((.((....))))..))))))))))))....(((((........))))).....)..)))))........... ( -24.11)
>DroYak_CAF1 12668 85 - 1
AGAUUAAUCAUUCGGGAAACCCUUUUGCGGCGAUCAUAGCCGGCUUUC--------CGUCUUGCCCUGAAUUUUAAAGAUAUUUCGGAAUUAA-----------
.............((....))......((((.......))))...(((--------((((((.............)))).....)))))....----------- ( -15.92)
>consensus
AGAUUAAUCAUUCGGGACACCCUUUUGCGGCGGUCAAAGCCGGCUAAC________CGGCUUACCUUAAACGUUAAAGAUGUUUCGGAAUUAAUCCUCUAACGA
.(((((((..(((((((((........((((.......)))).................(((.............))).))))))))))))))))......... (-12.48 = -13.72 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:30 2006