Locus 4909

Sequence ID 3R_DroMel_CAF1
Location 12,889,515 – 12,889,619
Length 104
Max. P 0.909686
window8034

overview

Window 4

Location 12,889,515 – 12,889,619
Length 104
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 85.86
Mean single sequence MFE -24.90
Consensus MFE -20.10
Energy contribution -20.66
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -2.00
Structure conservation index 0.81
SVM decision value 1.07
SVM RNA-class probability 0.909686
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12889515 104 - 27905053
UCGUUUGAUGUGCGGCGAUCUCCGAUCGCUGG------------U---AGAUACCAGCUCCCAUCUCCGAUUCCUAUGGCGCUGUAUUUAAUCUCGCUUACAUUCUACAUCCUACUCCG
..((..((((((((((((((...)))))))).------------(---((((((.(((..((((...........)))).))))))))))...............))))))..)).... ( -27.90)
>DroSec_CAF1 7209 104 - 1
UCGUUUGAUGUGCGGCGAUCUCCGAUCGCUGG------------U---AGAUACCAGCUCCCAUCUCCGAUUCCAAUGGCGCUGUAUUUAAUCUCGCUAACAUUCUACAUCCCACUCCG
..((..((((((((((((((...)))))))).------------(---((((((.(((..((((...........)))).))))))))))...............))))))..)).... ( -27.20)
>DroSim_CAF1 6241 104 - 1
UCGUUUGAUGUGCGGCGAUCUCCGAUCGCUGG------------U---AGAUACCAGCUCCCAUCUCCGAUUCCAAUGGCGCUGUAUUUAAUCUCGCUUACAUUCUACAUCCCACUCCG
..((..((((((((((((((...)))))))).------------(---((((((.(((..((((...........)))).))))))))))........))))))..))........... ( -27.20)
>DroEre_CAF1 5684 119 - 1
UCGUUUGAUGUGCGGCGAUCUCCGAUCUCCGAUCUCCCAUCUCCCAGCAGCUCCCAUCUCCCAUCUCCGAUUCCUAUGGCGCUGUAUUCAAUCUCGCUUACAUUCUACAUCCUACUCCG
..((..((((((.(((((.....((((...))))............(((((..((((.....(((...)))....)))).)))))........)))))))))))..))........... ( -23.30)
>DroYak_CAF1 7304 116 - 1
UCGUUUGAUGUGCGGCGAUCUCCGAUCUCCCAUCUCCCAUCUACCA---UCUACCAGCUCCCAUCUCCGAUUCCUAUGGCGCUGUAUUUAAUCUCGCUUACAUUCUACAUCCUACACCG
..((..((((((.(((((.....(((.....)))............---.....((((..((((...........)))).)))).........)))))))))))..))........... ( -18.90)
>consensus
UCGUUUGAUGUGCGGCGAUCUCCGAUCGCUGG____________U___AGAUACCAGCUCCCAUCUCCGAUUCCUAUGGCGCUGUAUUUAAUCUCGCUUACAUUCUACAUCCUACUCCG
..((..((((((((((((((...)))))))).......................((((..((((...........)))).)))).....................))))))..)).... (-20.10 = -20.66 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:46 2006