Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,887,749 – 12,887,854 |
Length | 105 |
Max. P | 0.848544 |
Location | 12,887,749 – 12,887,854 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 89.29 |
Mean single sequence MFE | -30.76 |
Consensus MFE | -29.50 |
Energy contribution | -29.70 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.37 |
Structure conservation index | 0.96 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848544 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12887749 105 + 27905053 GGGAACACAAUUCCAGGAAUUGUAACGACGAGUGGUCCCGCGACCGGUGCUUUGGUCUUUGGACAUCGCAGUUCCAUUGGCUCUCCGACUCCGACCGAUUCCGCC .((((((((((((...)))))))...(.(((...((((...((((((....))))))...)))).)))).)))))(((((.((.........)))))))...... ( -31.40) >DroSec_CAF1 5527 84 + 1 GGGAACACAAUUCCAGGAAUUGUAACGACGAGUGGUCCCGCGACCGGUGCUUUGGUCUUUGGACAUCGCGGUUCCAUUGGCUCU--------------------- .((((((((((((...)))))))..((.(((...((((...((((((....))))))...)))).)))))))))).........--------------------- ( -30.60) >DroSim_CAF1 4584 84 + 1 GGGAACACAAUUCCAGGAAUUGUAACGACGAGUGGUCCCGCGACCGGUGCUUUGGUCUUUGGACAUCGCGGUUCCAUUGGCUUU--------------------- .((((((((((((...)))))))..((.(((...((((...((((((....))))))...)))).)))))))))).........--------------------- ( -30.60) >DroEre_CAF1 3934 86 + 1 GGGAACACAAUUCCAGGAAUUGUAACGACGAGUGGUCCCGCGACCGGUGCUUUGGUCUUUGGACAUCGCGGUUCCAUUGGCUCUU-------------------U .((((((((((((...)))))))..((.(((...((((...((((((....))))))...)))).))))))))))..........-------------------. ( -30.60) >DroYak_CAF1 5562 86 + 1 GGGAACACAAUUCCAGGAAUUGUAACGACGAGUGGUCCCGCGACCGGUGCUUUGGUCUUUGGACAUCGCGGUUCCAUUGGCUCUU-------------------U .((((((((((((...)))))))..((.(((...((((...((((((....))))))...)))).))))))))))..........-------------------. ( -30.60) >consensus GGGAACACAAUUCCAGGAAUUGUAACGACGAGUGGUCCCGCGACCGGUGCUUUGGUCUUUGGACAUCGCGGUUCCAUUGGCUCU_____________________ .((((((((((((...)))))))..((.(((...((((...((((((....))))))...)))).)))))))))).............................. (-29.50 = -29.70 + 0.20)
Location | 12,887,749 – 12,887,854 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 89.29 |
Mean single sequence MFE | -27.66 |
Consensus MFE | -26.20 |
Energy contribution | -26.04 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.30 |
Structure conservation index | 0.95 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12887749 105 - 27905053 GGCGGAAUCGGUCGGAGUCGGAGAGCCAAUGGAACUGCGAUGUCCAAAGACCAAAGCACCGGUCGCGGGACCACUCGUCGUUACAAUUCCUGGAAUUGUGUUCCC (((((....(((((((((((.((..((...))..)).)))).)))...((((........))))....))))..)))))..((((((((...))))))))..... ( -33.10) >DroSec_CAF1 5527 84 - 1 ---------------------AGAGCCAAUGGAACCGCGAUGUCCAAAGACCAAAGCACCGGUCGCGGGACCACUCGUCGUUACAAUUCCUGGAAUUGUGUUCCC ---------------------.........((((((((((.((((...((((........))))...))))...))).))..(((((((...)))))))))))). ( -26.30) >DroSim_CAF1 4584 84 - 1 ---------------------AAAGCCAAUGGAACCGCGAUGUCCAAAGACCAAAGCACCGGUCGCGGGACCACUCGUCGUUACAAUUCCUGGAAUUGUGUUCCC ---------------------.........((((((((((.((((...((((........))))...))))...))).))..(((((((...)))))))))))). ( -26.30) >DroEre_CAF1 3934 86 - 1 A-------------------AAGAGCCAAUGGAACCGCGAUGUCCAAAGACCAAAGCACCGGUCGCGGGACCACUCGUCGUUACAAUUCCUGGAAUUGUGUUCCC .-------------------..........((((((((((.((((...((((........))))...))))...))).))..(((((((...)))))))))))). ( -26.30) >DroYak_CAF1 5562 86 - 1 A-------------------AAGAGCCAAUGGAACCGCGAUGUCCAAAGACCAAAGCACCGGUCGCGGGACCACUCGUCGUUACAAUUCCUGGAAUUGUGUUCCC .-------------------..........((((((((((.((((...((((........))))...))))...))).))..(((((((...)))))))))))). ( -26.30) >consensus _____________________AGAGCCAAUGGAACCGCGAUGUCCAAAGACCAAAGCACCGGUCGCGGGACCACUCGUCGUUACAAUUCCUGGAAUUGUGUUCCC ..............................((((((((((.((((...((((........))))...))))...))).))..(((((((...)))))))))))). (-26.20 = -26.04 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:44 2006