Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,887,494 – 12,887,595 |
Length | 101 |
Max. P | 0.625881 |
Location | 12,887,494 – 12,887,595 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 78.56 |
Mean single sequence MFE | -37.72 |
Consensus MFE | -23.04 |
Energy contribution | -23.54 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.61 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625881 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12887494 101 + 27905053 AACCAGCGUGCCUGUGCAACGG-----GCCUGUGCACUGGCAACUGGAU-GAAGGCAACGGGCAGCGGG--------CAACAGGGAAC-UGGCAAUCGGCAACAGGCAACAGACCG ........(((((((((..(((-----((((((((.(((....((....-..))....)))))).))))--------)..(((....)-))....))))).)))))))........ ( -35.60) >DroSec_CAF1 5264 109 + 1 AACCAGUGUGCCUGUGCAACGG-----GCCUGUGAACUGGCAACUGGAU-GAAGGCAACGGGCAGCGGGCAGCAGGGCAACAGGGAAC-UGGCAAUCGGCAACAGGCAACAGGCCG ..(((((.(.(((((((.....-----((((((...(((....((....-..))....)))...))))))......)).))))).)))-)))....((((....(....)..)))) ( -39.50) >DroSim_CAF1 4336 94 + 1 AACCAGCGUGCCUGUGCAACGG-----GCCUGUGCACUGGCAACUGGAU-GAAGGCAGCGGGCAG---------------CAGGGAAC-UGGCAAUCGGCAACAGGCAACAGGCCG ......((.((((((((.....-----(((..(((.(((.(..(((...-.....)))..).)))---------------(((....)-)))))...))).....)).)))))))) ( -35.90) >DroEre_CAF1 3685 88 + 1 UGCCAGUGUGCCUGUGCAACGG-----GCCUGUGCACUGGCAACUGGAA-AAAGGCAGCAGGGAACUGG--------CAACAGGGAAAUCGGC--------------AACAGGCCG ((((((((((((((.....)))-----))....))))))))).......-...(((.........(((.--------...))).......(..--------------..)..))). ( -34.80) >DroYak_CAF1 5284 108 + 1 UACCAGUGUGCCUGUGCAACGGCAACGGGCUGUGCACUGGCAUCUGGAAAAAAGGCAACAGGGAACUGG--------CAACAGGGAAAUCGGCAAUCGGCAACAGGCAACAGGCCG ..((((.(((((.(((((.((((.....))))))))).)))))))))......(....)......(((.--------...)))......((((....(....).(....)..)))) ( -42.80) >consensus AACCAGUGUGCCUGUGCAACGG_____GCCUGUGCACUGGCAACUGGAU_GAAGGCAACGGGCAGCGGG________CAACAGGGAAC_UGGCAAUCGGCAACAGGCAACAGGCCG ..((((..((((.(((((.(((.......)))))))).)))).))))...........................................(((.....((.....)).....))). (-23.04 = -23.54 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:43 2006