Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,886,339 – 12,886,486 |
Length | 147 |
Max. P | 0.798850 |
Location | 12,886,339 – 12,886,446 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 94.28 |
Mean single sequence MFE | -30.02 |
Consensus MFE | -27.38 |
Energy contribution | -27.98 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.27 |
Structure conservation index | 0.91 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798850 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12886339 107 + 27905053 CCGUCGCCACCAGCUAGUUGGCGCACCGUUUAGAGAUCCCAUUCGCACUAUGUACAUUCGGGCAAAUAUCGGAGCAUGUGCAUGU------------ACAUCGUACAUAUGUGCAUUAC ..(((((((.(.....).))))).))..................(((((((((((.(((((.......)))))(.(((((....)------------)))))))))))).))))..... ( -28.60) >DroSec_CAF1 4076 107 + 1 CCGUCGCCACCAGCUAGUUGGCGCACCGUUUAGAGAUCCCAUUCGCACUAUGUACAUUCGGGCAAACAUCGGAGCAUGUGCAUGU------------ACAUCGUACAUAUGUGCAUUAC ..(((((((.(.....).))))).))..................(((((((((((.(((((.......)))))(.(((((....)------------)))))))))))).))))..... ( -28.60) >DroSim_CAF1 3145 107 + 1 CCGUCGCCACCAGCUAGUUGGCGCACCGUUUAGAGAUCCCAUUCGCACUAUGUACAUUCGGGCAAACAUCGGAGCAUGUGCAUGU------------ACAUCGUACAUAUGUGCAUUAC ..(((((((.(.....).))))).))..................(((((((((((.(((((.......)))))(.(((((....)------------)))))))))))).))))..... ( -28.60) >DroEre_CAF1 2547 107 + 1 CCGUCGCCACCAGCUAGUUGGCGCACCGUUUAAAAAUCCCAUUCGCACUAUGUACAUUCGGGCAAACAUCGGAGCAUGUGCAUGU------------ACAUCGUACAUAUGUGCAUUAC ..(((((((.(.....).))))).))..................(((((((((((.(((((.......)))))(.(((((....)------------)))))))))))).))))..... ( -28.60) >DroYak_CAF1 4100 119 + 1 CCGUCGCCACCAGCUAGUUGGCGCACCGUUUAAAAAUCCCAUUCGCACUAUGUACAUUCGGGCAAACAUCGGAGCAUGUGCAUGUACAUACAUAUGUACAUCGUACAUAUGUGCAUUAC ..(((((((.(.....).))))).))..................(((((((((((.(((((.......)))))(.((((((((((......)))))))))))))))))).))))..... ( -35.70) >consensus CCGUCGCCACCAGCUAGUUGGCGCACCGUUUAGAGAUCCCAUUCGCACUAUGUACAUUCGGGCAAACAUCGGAGCAUGUGCAUGU____________ACAUCGUACAUAUGUGCAUUAC ..(((((((.(.....).))))).))..................(((((((((((.(((((.......)))))((....))(((((((......))))))).))))))).))))..... (-27.38 = -27.98 + 0.60)
Location | 12,886,379 – 12,886,486 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 85.95 |
Mean single sequence MFE | -28.03 |
Consensus MFE | -19.47 |
Energy contribution | -22.57 |
Covariance contribution | 3.10 |
Combinations/Pair | 1.12 |
Mean z-score | -2.85 |
Structure conservation index | 0.69 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519154 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12886379 107 + 27905053 AUUCGCACUAUGUACAUUCGGGCAAAUAUCGGAGCAUGUGCAUGU------------ACAUCGUACAUAUGUGCAUUACAUACAUGUGCGCUUUCCGAUUUGUUUGUUUUUAUUUUUAG .......(((.(((.(..(((((((..(((((((..((..(((((------------(....((((....))))......))))))..))..))))))))))))))..).)))...))) ( -29.10) >DroSec_CAF1 4116 107 + 1 AUUCGCACUAUGUACAUUCGGGCAAACAUCGGAGCAUGUGCAUGU------------ACAUCGUACAUAUGUGCAUUACAUACAUGUGCGCUUUCCGAUUUGUUUGUUUUUAUUUUUAG ...................(((((((((((((((..((..(((((------------(....((((....))))......))))))..))..))))))..))))))))).......... ( -29.50) >DroSim_CAF1 3185 107 + 1 AUUCGCACUAUGUACAUUCGGGCAAACAUCGGAGCAUGUGCAUGU------------ACAUCGUACAUAUGUGCAUUACAUACAUGUGCGCUUUCCGAUUUGUUUGUUUUUAUUUUUAG ...................(((((((((((((((..((..(((((------------(....((((....))))......))))))..))..))))))..))))))))).......... ( -29.50) >DroEre_CAF1 2587 107 + 1 AUUCGCACUAUGUACAUUCGGGCAAACAUCGGAGCAUGUGCAUGU------------ACAUCGUACAUAUGUGCAUUACAUACAUGUGCGCUUUCCGAUUUGUUUGUUUUUAUUUUUAG ...................(((((((((((((((..((..(((((------------(....((((....))))......))))))..))..))))))..))))))))).......... ( -29.50) >DroYak_CAF1 4140 119 + 1 AUUCGCACUAUGUACAUUCGGGCAAACAUCGGAGCAUGUGCAUGUACAUACAUAUGUACAUCGUACAUAUGUGCAUUACAUACAUGUGCGCUUUCCGAUUUGUUUGUUUUUAUUUUUAG ...................(((((((((((((((((((((.(((((..(((((((((((...)))))))))))...))))).)))))))....)))))..))))))))).......... ( -37.10) >DroPer_CAF1 4238 83 + 1 ACUCGCACUAUGUAUA------CAUA------------UGUAUGU------------ACA---UACAUA--UGCAUU-CAUACAAAUGUAUUUUCUGAUUUGUUUGUUUUUAUUUUUAG ....(((.((((((((------(((.------------...))))------------)..---))))))--)))...-...(((((((.(((....))).)))))))............ ( -13.50) >consensus AUUCGCACUAUGUACAUUCGGGCAAACAUCGGAGCAUGUGCAUGU____________ACAUCGUACAUAUGUGCAUUACAUACAUGUGCGCUUUCCGAUUUGUUUGUUUUUAUUUUUAG ...................(((((((((((((((.(((((((((((((......))))))).))))))..((((((.........)))))).))))))..))))))))).......... (-19.47 = -22.57 + 3.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:42 2006