Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,885,117 – 12,885,209 |
Length | 92 |
Max. P | 0.825161 |
Location | 12,885,117 – 12,885,209 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 88.87 |
Mean single sequence MFE | -22.86 |
Consensus MFE | -18.38 |
Energy contribution | -18.06 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.14 |
Mean z-score | -1.73 |
Structure conservation index | 0.80 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.825161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12885117 92 - 27905053 -----UUACACUUUCUUUUCUGUGCAGGAACUUGAAAUUCAGUUUAAUGCAUACGG------AUACAGAUACAGAUGCACCUUGUAUCUGGCUCUUUUGGCUG -----........(((.(((((((((.(((((.(.....))))))..)))))).))------)...)))..(((((((.....)))))))(((.....))).. ( -20.90) >DroSec_CAF1 2889 92 - 1 -----UUACACUUUCUUUUCUGUGCAGAAACUUGAAAUUCAGUUUAAUGCAUACGG------AUACAGAUACAGAUGCACCUUGUAUCUGGCUCUUUUGGCUA -----........(((.(((((((((.(((((.(.....))))))..)))))).))------)...)))..(((((((.....)))))))(((.....))).. ( -20.50) >DroSim_CAF1 1484 91 - 1 ------UACACUUUCUUUUCUGUGCAGAAACUUGAAAUUCAGUUUAAUGCAUACGG------AUACAGAUACAGAUGCACCUUGUAUCUGGCUCUUUUGGAUG ------...........(((((((((.(((((.(.....))))))..)))))).))------)...(((..(((((((.....)))))))..)))........ ( -20.10) >DroEre_CAF1 1386 103 - 1 GGUAUCCACACUUUCCUUUCUGUGUAGGAACUUGAAAUUCAGUUUAAUGCAUUCGGAUACCGAUACAGAUACAGAUGCACCUUGUAUCUGGCUCUUUUGACUU (((((((.((..(((((........)))))..)).......((.....))....)))))))((..(((((((((.......)))))))))..))......... ( -29.30) >DroYak_CAF1 2954 100 - 1 AGUAUCUACACUUUCUUUUCUGUGCAGGAACUUGAAAUUCAGUUUAAUGCAUGCGGAU---GAUACAGAUACAGAUGCACCUUGUAUCUGGCUCUUUUGGCUU .(((((............((((((((.(((((.(.....))))))..)))..))))).---)))))(((..(((((((.....)))))))..)))........ ( -23.52) >consensus _____CUACACUUUCUUUUCUGUGCAGGAACUUGAAAUUCAGUUUAAUGCAUACGG______AUACAGAUACAGAUGCACCUUGUAUCUGGCUCUUUUGGCUG ....................((((((.(((((.(.....))))))..)))))).............(((..(((((((.....)))))))..)))........ (-18.38 = -18.06 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:40 2006