Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,882,505 – 12,882,604 |
Length | 99 |
Max. P | 0.989579 |
Location | 12,882,505 – 12,882,604 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 80.78 |
Mean single sequence MFE | -21.40 |
Consensus MFE | -20.99 |
Energy contribution | -20.77 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -1.06 |
Structure conservation index | 0.98 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989579 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12882505 99 + 27905053 UUCCCCCUUACCAAUCGUUCCCCCCCACCAUCGUCCGUCUCUUUCUCGCUGACAGCUGAUGCUGCCGCACAGAUCU-UUGCAUAUGCACUGGCGUCGGCU ...............................................((((((.(((..(((....(((.......-.)))....)))..))))))))). ( -20.10) >DroSim_CAF1 13731 80 + 1 UUCC-------------------CCCACCAUCGUCCGUCUCUUUCCCGCCGACAGCUGAUGCUGCCGCACAGAUCU-UUGCAUAUGCACUGGCGUCGGCU ....-------------------........................((((((.(((..(((....(((.......-.)))....)))..))))))))). ( -22.30) >DroEre_CAF1 13274 78 + 1 ----------------------CCCCACCAUCGUGCGUCUCUUUCCCGCCGACAGCUGAUGCUGCCGCACAGAUCUUUUGCAUAUGCACUGGCGUCGGCU ----------------------...(((....)))............((((((.(((..(((....(((.........)))....)))..))))))))). ( -21.80) >consensus UUCC__________________CCCCACCAUCGUCCGUCUCUUUCCCGCCGACAGCUGAUGCUGCCGCACAGAUCU_UUGCAUAUGCACUGGCGUCGGCU ...............................................((((((.(((..(((....(((.........)))....)))..))))))))). (-20.99 = -20.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:37 2006