Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,880,437 – 12,880,555 |
Length | 118 |
Max. P | 0.972057 |
Location | 12,880,437 – 12,880,555 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 95.09 |
Mean single sequence MFE | -32.60 |
Consensus MFE | -32.18 |
Energy contribution | -31.74 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.17 |
Mean z-score | -1.41 |
Structure conservation index | 0.99 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972057 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12880437 118 - 27905053 AACAAUAACAAUUUUUAACGUGGUGGAAAAGGUGUUU-UUUGUUGGCUUGCGAUUUGCGCUCUGCUUUGAUUCUGCCGGCGUCGCUACCACCGCUAUAUACGUAUACGUUUGUUUGUUU (((((..((((........(((((((....((((...-..(((((((..(((.....)))((......))....))))))).)))).))))))).....(((....)))))))))))). ( -29.50) >DroSec_CAF1 10896 118 - 1 AACAAUAACAAUU-UUAACGUGGUGGAAAAGGUGUUUUUUUGUUGGCUUGCGAUUUGCGCUCUGCUUUGAUUCUGCCGGCGUCGCUACCACCGCUAUAUACGUAUACGUAUGUUUGUUU ......(((((..-.....(((((((....((((......(((((((..(((.....)))((......))....))))))).)))).))))))).(((((((....)))))))))))). ( -32.40) >DroSim_CAF1 11259 118 - 1 AACAAUAACAAUU-UUAACGUGGUGGAAAAGGUGUUUUUUUGUUGGCUUGCGAUUUGCGCUCUGCUUUGAUUCUGCCGGCGUCGCUACCACCGCUAUAUAUGUAUACGUAUGUUUGUUU ......(((((..-.....(((((((....((((......(((((((..(((.....)))((......))....))))))).)))).))))))).(((((((....)))))))))))). ( -30.60) >DroEre_CAF1 11230 117 - 1 AACAAUAGCAAUU-UUAACGUGGUGGAAAAGGUGUUU-UUCGUUGGCUUGCGAUUUGCGCUCUGCUUUGAUUCUGCCGGCGUCGCUGCCGCCGCUGUAUACGUAUACGUAUGUUUGUCU .......((((..-.....(((((((....((((...-..(((((((..(((.....)))((......))....))))))).)))).)))))))..((((((....)))))).)))).. ( -35.20) >DroYak_CAF1 11171 117 - 1 AACAAUAACAAUU-UUAACGUGGUGGAAAAGGCCUUU-UUUGUUGGCUUGCGAUUUGCGCUCUGCUUUGAUUCUGCCGGCGUCGCUGCCGCCGCAAUAUACGUAUACGUAUGUUUGUUU ......((((...-.....(((((((...(((((...-......)))))(((....(((((..((.........)).))))))))..)))))))((((((((....)))))))))))). ( -35.30) >consensus AACAAUAACAAUU_UUAACGUGGUGGAAAAGGUGUUU_UUUGUUGGCUUGCGAUUUGCGCUCUGCUUUGAUUCUGCCGGCGUCGCUACCACCGCUAUAUACGUAUACGUAUGUUUGUUU ......(((((........(((((((....((((......(((((((..(((.....)))((......))....))))))).)))).))))))).(((((((....)))))))))))). (-32.18 = -31.74 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:35 2006