Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 307,510 – 307,630 |
Length | 120 |
Max. P | 0.782514 |
Location | 307,510 – 307,630 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.25 |
Mean single sequence MFE | -40.92 |
Consensus MFE | -34.08 |
Energy contribution | -34.68 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.06 |
Mean z-score | -1.53 |
Structure conservation index | 0.83 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 307510 120 - 27905053 CGUCCACGGCGAAAGACCGGGGCAGAAAUUCCUUGAGGUUGAUGUUCCGAAACUGGGGAAAUUCCUUGGGCAUCUUAAGGAUAAACUGCUCCAGCUCGUAUAGGGCCAUUAGGCGCUCGA ((((...(((....).))(((((((....((((((((((((......)))..(..(((.....)))..)...)))))))))....))))))).((((.....)))).....))))..... ( -43.00) >DroSec_CAF1 43912 120 - 1 CUUCCACCGCGAAAGACCGGGGCAGAAAUUCCUUGAGGUUGAUGUUCCGAAACUGGGGAAAUUCCUUGGGCAUCUUAAGGAUAAACUGCUCCAGCUCGUAUAGGGCCAUCAGGCGCUCGA .........(((..(.(((((((((....((((((((((((......)))..(..(((.....)))..)...)))))))))....))))))).((((.....)))).....)))..))). ( -41.10) >DroSim_CAF1 44759 120 - 1 CUUCCACCGCGAAAGACCGGGGCAGAAAUUCCUUGAGGUUGAUGUUCCGAAACUGGGGAAAUUCCUUGGGCAUCUUAAGGAUAAACUGCUCCAGCUCGUAUAGGGCCAUCAGGCGCUCGA .........(((..(.(((((((((....((((((((((((......)))..(..(((.....)))..)...)))))))))....))))))).((((.....)))).....)))..))). ( -41.10) >DroEre_CAF1 46832 120 - 1 CGUCCACGGCGAAGGACCGGGGCAGAAACUCCUUGAGGUUGAUGUUCCGGAACUGUGGAAAUUCCUUUGGCAUCUUAAGGAUAAACUGCUCCAAUUCGUAUAGGGCCAUUAGGCGCUCGA .((((........)))).(((((((....((((((((((..(..(((((......)))))......)..))..))))))))....)))))))...(((...((.(((....))).))))) ( -40.30) >DroYak_CAF1 46648 120 - 1 CGUCCACGGCGAAAGACCGGGGCAGAAAUUCCUUGAGGUUGAUAUUCCGGAACUGGGGAAAUUCUUUCGGCAUCUUAAGGAUAAACUGCUCCAACUCAUAUAGGGCCAUUAGCCGCUCGA .((((..(((....).))(((((((....(((((((((((((..((((........))))......)))))..))))))))....)))))))..........)))).............. ( -39.10) >consensus CGUCCACGGCGAAAGACCGGGGCAGAAAUUCCUUGAGGUUGAUGUUCCGAAACUGGGGAAAUUCCUUGGGCAUCUUAAGGAUAAACUGCUCCAGCUCGUAUAGGGCCAUUAGGCGCUCGA .......(((....).))(((((((....((((((((((((......)))..(..(((.....)))..)...)))))))))....)))))))...(((...((.(((....))).))))) (-34.08 = -34.68 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:20 2006