Locus 4898

Sequence ID 3R_DroMel_CAF1
Location 12,876,459 – 12,876,563
Length 104
Max. P 0.899686
window8020

overview

Window 0

Location 12,876,459 – 12,876,563
Length 104
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 95.82
Mean single sequence MFE -44.14
Consensus MFE -40.18
Energy contribution -40.90
Covariance contribution 0.72
Combinations/Pair 1.09
Mean z-score -1.43
Structure conservation index 0.91
SVM decision value 1.01
SVM RNA-class probability 0.899686
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12876459 104 - 27905053
ACUGCGACCACUGCGCAGUGAUACGGAUAUGGAUGCGGACACCACGGCG------GCACGGAAGAAUCAUUGGACAAGGCGCCGUCGCCGCCGCCGUCUGAAACCGAAUC
((((((.......))))))(((.(((....((.((....))))((((((------((.(....).............((((....))))))))))))......))).))) ( -38.70)
>DroSec_CAF1 6817 110 - 1
ACUGCGACCACUGCGCAGUGCUACGGAUAUGGAUGCGGACACCACGGCGGCGUCGGCACGGAAGAAUCAUUGGACAAGGCGCCGUCGCCGCCGCCGCUUGAAACCGAAUC
((((((.......))))))....(((...(.((.((((......((((((((.((((.(....)..((....))......)))).)))))))))))))).)..))).... ( -44.30)
>DroSim_CAF1 7200 110 - 1
ACUGCGACCACUGCGCAGUGCUACGGAUAUGGAUGCGGACACCACGGCGGCGUCGGCACGGAAGAAUCAUUGGACAAGGCGCCGUCGCCGCCGCCGUCUGAAACCGAAUC
((((((.......))))))......(((.(((...(((((....((((((((.((((.(....)..((....))......)))).))))))))..)))))...))).))) ( -46.00)
>DroEre_CAF1 7231 110 - 1
GCUGCGACCACUGCGCAGUGAUACGGAUAUGGAUGCGGACACCACGGCGGCGUCGGCACGGAAGAAUCAUUGGACAAGGCGCCGUCGCCGCCGCCGUCUGAAACCGAAUC
((((((.......))))))......(((.(((...(((((....((((((((.((((.(....)..((....))......)))).))))))))..)))))...))).))) ( -46.30)
>DroYak_CAF1 7043 110 - 1
ACUGCGACCACUGCGCAGUGAUACGGAUAUGGAUGUGGACACCACGGCGGCGUCGGCACGGAAGAAUCAUUGGACAAGGCGCCGUCGCCGCCGCCGUCUGAAACCGAAUC
((((((.......))))))(((.(((...(((((((((...))))(((((((.((((.(....)..((....))......)))).)))))))...)))))...))).))) ( -45.40)
>consensus
ACUGCGACCACUGCGCAGUGAUACGGAUAUGGAUGCGGACACCACGGCGGCGUCGGCACGGAAGAAUCAUUGGACAAGGCGCCGUCGCCGCCGCCGUCUGAAACCGAAUC
((((((.......))))))......(((.(((...(((((....((((((((.((((.(....)..((....))......)))).))))))))..)))))...))).))) (-40.18 = -40.90 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:33 2006