Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,869,269 – 12,869,364 |
Length | 95 |
Max. P | 0.999856 |
Location | 12,869,269 – 12,869,364 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 90.81 |
Mean single sequence MFE | -25.34 |
Consensus MFE | -21.42 |
Energy contribution | -21.50 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.04 |
Mean z-score | -1.97 |
Structure conservation index | 0.85 |
SVM decision value | 1.78 |
SVM RNA-class probability | 0.977024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12869269 95 + 27905053 C------------UAUCGAUAGUACCAUCGAUAUUUUGACAGCUAUACUGCUGAGGUGACAACUUGUCACUGACAAGUCAUGAUAAUUUUUUGUAAAGCAAUAGAUU .------------(((((((......)))))))...(((((((......)))..((((((.....)))))).....))))....(((((.(((.....))).))))) ( -22.10) >DroSec_CAF1 1523 95 + 1 C------------UAUCGAUAGUACCAUCGAUUGUUUGACAGCUCUACUGCUGAGGUGACAACUUGUCACUGACAAGUCAUGAUAAUUUUUUGUAAAGCAAUAGAUU (------------(((.(....(((.(..((((((((((((((......)))..((((((.....)))))).....)))).)))))))..).)))...).))))... ( -22.10) >DroSim_CAF1 1634 95 + 1 C------------UAUCGAUAGUACCAUCGAUGUUUUGACAGCUCUACUGCUGAGGUGACAACUUGUCACUGACAAGUCAUGAUAAUUUUUUGUAAAGCAAUAGAUU .------------(((((((......)))))))..........((((.((((..((((((.....)))))).(((((..((....))..)))))..)))).)))).. ( -22.60) >DroEre_CAF1 2786 107 + 1 CCGCCGAUGGUAGUAUCGAUAGUACCAUCGAUGCUUUGACAGCUCUACUGCUGAGGUGACAACUUGUCACUGACAAGUCAUGAUAAUUUUUUGUAAAGCAAUAGAUU ....((((((((.((....)).)))))))).((((((..((((......)))).((((((.....)))))).(((((..((....))..)))))))))))....... ( -33.10) >DroYak_CAF1 1674 107 + 1 CCGCCGAUUGUAGUAUCGAUAGUACCAUCGAUGUUUUGACAGCUCUACUGCUGAGGUGACAAAUUGUCACUGACAAGUCAUGAUAAUUUUUUGUAAAGCAAUAGAUU ..((((((.(((.((....)).))).)))).(((....)))))((((.((((...(..(.(((((((((.(((....)))))))))))).)..)..)))).)))).. ( -26.80) >consensus C____________UAUCGAUAGUACCAUCGAUGUUUUGACAGCUCUACUGCUGAGGUGACAACUUGUCACUGACAAGUCAUGAUAAUUUUUUGUAAAGCAAUAGAUU .............(((((((......)))))))...(((((((......)))..((((((.....)))))).....))))....(((((.(((.....))).))))) (-21.42 = -21.50 + 0.08)
Location | 12,869,269 – 12,869,364 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 90.81 |
Mean single sequence MFE | -26.61 |
Consensus MFE | -23.68 |
Energy contribution | -23.88 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.95 |
Structure conservation index | 0.89 |
SVM decision value | 4.27 |
SVM RNA-class probability | 0.999856 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12869269 95 - 27905053 AAUCUAUUGCUUUACAAAAAAUUAUCAUGACUUGUCAGUGACAAGUUGUCACCUCAGCAGUAUAGCUGUCAAAAUAUCGAUGGUACUAUCGAUA------------G ....(((((((................(((....)))(((((.....)))))...)))))))............((((((((....))))))))------------. ( -21.30) >DroSec_CAF1 1523 95 - 1 AAUCUAUUGCUUUACAAAAAAUUAUCAUGACUUGUCAGUGACAAGUUGUCACCUCAGCAGUAGAGCUGUCAAACAAUCGAUGGUACUAUCGAUA------------G ..(((((((((................(((....)))(((((.....)))))...)))))))))...........(((((((....))))))).------------. ( -24.80) >DroSim_CAF1 1634 95 - 1 AAUCUAUUGCUUUACAAAAAAUUAUCAUGACUUGUCAGUGACAAGUUGUCACCUCAGCAGUAGAGCUGUCAAAACAUCGAUGGUACUAUCGAUA------------G ..(((((((((................(((....)))(((((.....)))))...)))))))))...........(((((((....))))))).------------. ( -24.80) >DroEre_CAF1 2786 107 - 1 AAUCUAUUGCUUUACAAAAAAUUAUCAUGACUUGUCAGUGACAAGUUGUCACCUCAGCAGUAGAGCUGUCAAAGCAUCGAUGGUACUAUCGAUACUACCAUCGGCGG ..(((((((((................(((....)))(((((.....)))))...)))))))))(((.....))).(((((((((.((....)).)))))))))... ( -32.50) >DroYak_CAF1 1674 107 - 1 AAUCUAUUGCUUUACAAAAAAUUAUCAUGACUUGUCAGUGACAAUUUGUCACCUCAGCAGUAGAGCUGUCAAAACAUCGAUGGUACUAUCGAUACUACAAUCGGCGG ..(((((((((................(((....)))(((((.....)))))...)))))))))((((.......(((((((....)))))))........)))).. ( -29.66) >consensus AAUCUAUUGCUUUACAAAAAAUUAUCAUGACUUGUCAGUGACAAGUUGUCACCUCAGCAGUAGAGCUGUCAAAACAUCGAUGGUACUAUCGAUA____________G ..(((((((((................(((....)))(((((.....)))))...)))))))))...........(((((((....))))))).............. (-23.68 = -23.88 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:29 2006