Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 12,868,789 – 12,868,889 |
Length | 100 |
Max. P | 0.588420 |
Location | 12,868,789 – 12,868,889 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 83.40 |
Mean single sequence MFE | -29.01 |
Consensus MFE | -19.08 |
Energy contribution | -19.36 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.19 |
Mean z-score | -1.77 |
Structure conservation index | 0.66 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588420 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12868789 100 + 27905053 ------CUAAGUUGUUUUGGAAAAGGAAACAGGCUCGUAGUUCCGUCCAAAGCAAUAGUUCAAGAACUAGUAAUUUAGGGAUGAGCUUGCGGGCGCUGAUUUCAAG ------(((((....)))))....((((.((((((((((((((.((((.......(((((....))))).........)))))))).))))))).))).))))... ( -30.39) >DroSec_CAF1 1031 99 + 1 ------CUAAGUUGUUUUGGUA-AGGAAACAGGCUCGCAGUUCCGUCCAAAGCAAUAGUUCAAGAACUAGUAAUUUAGGGAUGAGCUUGCGGGCGCUGAUUUCAAG ------(((((....)))))..-.((((.((((((((((((((.((((.......(((((....))))).........)))))))).))))))).))).))))... ( -31.89) >DroSim_CAF1 1145 100 + 1 ------CUAAGUUGUUUUGGUAAAGGAAACAGGCUCACAGUUCCGUCCAAAGCAAUAGUUCAAGAACUAGUAAUUUAGGGAUGAGCUUGCGGGCGCUGAUUUCAAG ------(((((....)))))....((((.(((((((.((((((.((((.......(((((....))))).........)))))))).)).)))).))).))))... ( -26.49) >DroEre_CAF1 2232 106 + 1 AGGUGGCCAAUUUGUUUUGGAAAAGAAAAUACGCUCGCUGUUCCGUCCGAAGCAAUAGUUCAAGAACUAGUCAUUUAGAGAUGAGUUGGCGGCCGCUGGCUUCAAG .(((((((...((((((((((...(((....(....)...)))..))))))))))(((((....)))))((((((((....)))).)))))))))))......... ( -31.40) >DroYak_CAF1 1155 106 + 1 AAAUGACCAAUUUGUUUUGAAAACGAAAAUAUGCUCGGCGUUCAGUCCGAAGCAAUAGUUCAAGAACUAGUUACUUAGAAAUGAGUUGGCAACCGCUGGUUUCAAG ....(((((.((((..(((((..(((........)))...)))))..))))((..(((((....)))))((((((((....)))).))))....)))))))..... ( -24.90) >consensus ______CUAAGUUGUUUUGGAAAAGGAAACAGGCUCGCAGUUCCGUCCAAAGCAAUAGUUCAAGAACUAGUAAUUUAGGGAUGAGCUUGCGGGCGCUGAUUUCAAG ...........((((((((((...((((............)))).))))))))))(((((....)))))........(((((.(((........))).)))))... (-19.08 = -19.36 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:28 2006